Pseudomonas alcaliphila 34, D567_RS0111205

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas alcaliphila 34 IIC, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGGTGATGCTCAAAGTTCTCTATGGCCTTAAGAACTTTGAGGGTAAATCCAAGTTCAAAACTTGGCTCTACAGCATCACCTACAACGAATGCATTACTCA GTATCGAAAAGAGCGGCGAAAGCGTCGATTGGTTGACGCCTTAAGTTTGGACCCGCTCGAAGAGGCTTCCGACGACAAGACACCCAAAGTCGAGGAGCGA GGCGGTCTGGATCGCTGGTTGGTTCACGTCAACCCGATCGATCGCGAGATTCTGGTGCTACGTTTTGTCGCAGAGCTCGAGTTTCAAGAGATTGCCGACA TCATGCACATGGGCTTGAGCGCAACGAAGATGCGCTACAAGCGAGCATTGGATCGGTTGCGGGATAAATTTTCGGACACTTCCGAAACTTAGTTCAGCTT CCCGACCACTAAGGGAGTGGCGAACCCTGATATAATCGCCGCCAAGTTGCCGACTGAAGTTAACGGCGACTTATTAACCACCAAGATGGGGATTTAACGG
DNA Sequence for Gene
>D567_RS0111205
ATGAAAGTAAAAAACACCTTGGGCGTAGTCATTGGCTCTCTCGTTGCCGCAACCTCCTTCGGCGCGCTGGCGCAAGGCCAAGGCGCTGTCGAGGTGGAGG GCTTCGTCAATCGCTACTTCACCGACGTTCAGCGTGATTACGCGCACAACGAAGGCAACCTGTTCGGTGGCAGCATTGGCTACTACCTGACTGACGACGT CGAACTGGCGCTGTCCTATGGCGAATACCACGACCTGCGTGGCGAAGGTTCGCAAGGCAGCAAGAATATCAAGGGCAACCTGACCGACCTGAAGGCCATC TACCACTTCGGTCAGCCGGGTGTTGGTCTGCGTCCGTACGTCTCTGCCGGTTTCGGCCATCAGAGCATCGGCGACGCCAACAGCGGTGGTCGTAACCACT CCACCCTGGCTATCGCTGGCGCTGGTGCCAAGTACTACTTCACCGAAATGTTCTACGCCCGTGCTGGCGTTGACGCTCTGTACAACATCGACCAGGGCGA CACCGAGTGGCAAGCTGGCGTGGGTGTTGGTCTGAACTTCGGTGGCGGCAGCAAGCCTGCTCCGGCTCCGGTCGTGGCTGCAGCGCCCGAGCCGATGCCT GAGCCCGCTCCTGAGCCGGTGATGGAAGCTGTTCGCGTTGAGCTGGACGTCAAGTTCGACTTCGACAAAGACCGCGTCAAAGAAGAAAGCTATGGCGACA TCAAGAACCTGGCTGACTTCATGAACCAGTACCCGCAGACCACCACCACTGTTGAAGGTCACACCGACTCCGTTGGTAGCGACGCTTACAACCAGAAACT GTCCGAGCGTCGTGCAAACGCCGTTCGTGACGTTCTGGTCAACCAGTACGGTGTTGACGGTAGCCGCGTAAACACTGCTGGTTACGGTGAAACCCGTCCG GTTGCTGACAACGCCACCGACTCCGGTCGCGCTATCAACCGTCGCGTTGAAGCTGAAGTGGAAGCCCAGATCCAGCAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGCTTCTGGAGCTCCAAGAAAAACCCGGCCTCGGCCGGGTTTTTTCTTTTCCGGAATAAAAAAGCCTGCCGAGGGGGCGACGGGCAGACAACTTCGTCGC AGGAGCGCGAAGCTTTCAGGCATGCAGGAGCTGAGGCATGCTGATCTGTGTGCTGGCGCGGGCGACTTCGCCGATCACCAGAATGGCCGGGCTCTTCAGG GCGAAGGCTGTTGCATCGTCCTGCATCGCGCCCAGTTGGCTGCGGCACTCACGCTGTGCGGGCAACGAGGCGTTCTCGATCATGGCCACCGGCATCTCGG CGCTCATGCCGCCGGCGAGCAGGCCGTCGCGAATATCCGCTAGCTTGGCGACACCCATATAAACCACCAAGGTGGTGCCGCTCTGCGCCAGTGCCGCCCA GTTCAGGCTGCTGTCGTCCTGGGTGTGGGCGGTGACCAGGGTCACGCCACGGGCCACACCGCGCAGGGTCAGAGGAATGCCGCAGTAGGTGGCGCCGGCC
Amino Acid Sequence
>porin
MKVKNTLGVVIGSLVAATSFGALAQGQGAVEVEGFVNRYFTDVQRDYAHNEGNLFGGSIGYYLTDDVELALSYGEYHDLRGEGSQGSKNIKGNLTDLKAI YHFGQPGVGLRPYVSAGFGHQSIGDANSGGRNHSTLAIAGAGAKYYFTEMFYARAGVDALYNIDQGDTEWQAGVGVGLNFGGGSKPAPAPVVAAAPEPMP EPAPEPVMEAVRVELDVKFDFDKDRVKEESYGDIKNLADFMNQYPQTTTTVEGHTDSVGSDAYNQKLSERRANAVRDVLVNQYGVDGSRVNTAGYGETRP VADNATDSGRAINRRVEAEVEAQIQQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site