Pseudomonas alcaliphila 34, D567_RS0109000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 423 | 457 | - |
| Coils | Coil | Coil | - | - | 367 | 418 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 457 | 617 | 4.2E-46 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 461 | 615 | 7.01732E-62 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 459 | 614 | 3.4E-43 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 249 | 618 | 1.2E-72 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 197 | 218 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 463 | 616 | 7.85E-48 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 447 | 618 | 3.1E-56 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 447 | 618 | 1.6E-55 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 452 | 618 | 1.7E-49 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.