Pseudomonas syringae pv. syringae SM, PssSM_1079 (lptF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGGCTCTGGCCGACCTTGCCGGCCAGATCGCCGCGCTTGAGGATCAGCGAAACGGCTCCGCCGCTGAGGATATCCACAGTCCTGGCAGCACCGGCCAA TACACGGCTTTCACCAACGGTGACCACCAGCGTTGCGGTTTTCAAGGTTTCTGGGCTTACGCTTTTAACAACCAATTCCATGTGGGGTCCCCGAATAGAC GATGAGAGTCGCAATATGAATGTCGTACGCGGCATGGCCTGAGTGTTTTCAGGGGCGATGCCTGCGCTAAGCCTTGCAGTTTGACCCCGCTGCACGACTG CTGACAACCCCGCAGAGCTGCCTGTCTGGCGTCTATGTGCGAACTATCCCCGGTGCGCAGTGACAGAAACACACATTCACAGGATAATGCCGCATATTTT TTGAGGCCCACGCCTTTTTTCGGCGTGAAGCTCTGGTTGCCGTGGCTCACAAATTTTCCCTGTTTGGCTGCCTGAGCCTGACAACTCTGGAGTGTCTGGT
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| DNA Sequence for Gene |
>PssSM_1079
|lptF
TTGATTGTCTTCCGTTATCTGTCCCGAGAAGTGCTGCTTACCTTGAGTGCGGTCAGCGCCGTACTGCTGGTCTTCATCATGAGCGGGCGCTTTATCAAGT ACCTGGCGCAGGCTGCGTCCGGTGCGCTCGATCCTGGCGTGCTGTTTCTGATCATGGGCTTCCGTCTGCCGGGCTTTCTGCAGGTGATTCTGCCGCTGGG CCTGTTCCTCGGCATCCTCATGGCGTACGGGCGCCTGTACCTGGAAAGCGAGATGACCGTGCTGGCCGCAACCGGCATGAGTCAGCAGCGTCTGCTGGCC ATCACTATGGGGCCGGCCACGCTGGTCGGGCTGCTGGTTGCCTGGTTGAGCTTCAGCCTGGCTCCGCAGGGCGCTACGCAGTTTTCGCTGCTGATCAATC AGCAGGACGCCATGACCGAGTTCGACACGCTGGTGCCGGGCCGTTTTCAGGCGCTGCGTGACGGCACGCGTATCACCTATACCAAGGAGCTGTCGGAAGA CCGCTCGCAACTGGCCGGTGTGTTTATCTCGGAAAAGCGCATGTCCAGCGACAAGAGCAAGGACAACGGCATCACCGTGCTGGTCGCAGAGAAGGGCCAT CAGGAGGTACGCCCCAATGGCAGTCGCTTCCTGATCCTCGAGAACGGCTATCGCTATGACGGCAATCCGGGGGCGGCCGACTATCGCGTGATCAAGTACG ACACCTATGGGGCGATGCTGCCCAAGCCGGAAATCAGCGAAGAAATCACCGACCGTGAAGCCATTCCGACCAGCGAACTGATCGGTAACCCGGCCCCGCG TTCAGTGGCCGAGTTGCAGTGGCGTATTTCGCTGCCGCTGTCGGTGTTCATCGTGACCTTAATGGCCATTCCGCTGTCACGGGTCAATCCGCGCCAGGGC CGTTACTTGAAACTGCTGCCGGCGATCCTGCTGTATATGTCGTACCTGGCCATTCTGATTTCGGTGCGCAGTTCGCTGGAGAAAGGCAAGTTGCCACTCA GCCTGGGGATGTGGTGGGTGCATGCCATATACCTGTCCATCGGCCTGCTGTTGTTCTATTGGGAGCCTCTGCGTCTGAAGATGGCGAGTCGTCGCAGCGT CACGGAGGTGACTCGTGGTCAAGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGATACATTGGCAAAAGCGTCCTGCTGGCGATTCTCGCCGTTCTAGGCATCATTCTGGGGCTGGTCTCGCTGTTCGCATTCATCGACGAGATGGGCGAT ATCAGCGACACCTACACGCTGGCGGATGCCCTCAGCTACGTCATGCTGACGGCGCCACGTCGCGTCTACGACACTTTGCCGATGGCCGCCCTGATCGGTT GCCTGATCGGTCTGGGCACGCTGGCCAGCAGCAGCGAGCTGACCATCATGCGAGCGGCGGGCGTGTCCATCGGGCGCATCGTCTGGGCGGTCATGAAGCC CATGCTGGTGCTGATGATCGCAGGCGTGCTGGTCGGCGAGTACGTTGCTCCCTATGCCGAGAACCAGGCTCAGGCTGCGCGATCGCTGGCTCAGGGCTCA GGTGATGCGCAGAGCGCCCGCCATGGTCTATGGCACCGCCAGGGCGATGAATTCATCCACATCAACACGGTGCAGCCCAATGGCCTGATGCTCGGTGTGA
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| Amino Acid Sequence |
>permease
MIVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLA ITMGPATLVGLLVAWLSFSLAPQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSSDKSKDNGITVLVAEKGH QEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAMLPKPEISEEITDREAIPTSELIGNPAPRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQG RYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLFYWEPLRLKMASRRSVTEVTRGQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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