Pseudomonas plecoglossicida NB2011, L321_24456
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NB2011 genomic scaffold PT1_scaffold85, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCGCCGGTTGGCGTTCGGACTGGCTGCCGGCAGGTTTCGAGCTGATCAACAGCTCCGTTCGCCGCGATCCTTCCCGTGACAGCACCATCAGCAGCCTG ATGTATGACGATGGCCTGGCACGTTTTTCGGTGTTCCTGGAACCGATCAAGGACGACTCCGGTGCTGACGTGCGCACTCAACTCGGCCCGACCGTGGCGG TTTCGCGTCGCCTGAACACGCCCAAGGGCAAGGTGATGGTCACCGTGGTCGGGGAAATCCCCCTGGGTACCGCAGAGCGCATCGCGTTGTCGATGCGGCC CCAGGATGCGCAGGCGCGCCAGTGATGGCGCGCTTTTTCGGCCCGTGCCAAGGCTTGCGGACATGCGCCTGAAATGAAATTAAAGCATTGTCATTTGCAA TCCATCGGTAAATTTTCTATAGGTCAGGCTTCTTGGAGTCTGGCCTTTCCTGCTTTTGCAGGGGCCTCTTGCTAACTACGCTCGTTGTGACGGGAGCCGT
|
|
| DNA Sequence for Gene |
>L321_24456
ATGTCAATACCACGCTTGAAATCCTACCTATCGATGTTCGCCGCCGTGCTGATGCTCGGCCAGGTGCTCAGCGCCCAGGCCGAGGAAGCCCTGCCGGACT TCACCACGCTGGTCGAGCAGGCCTCGCCGGCCGTGGTCAACATCAGTACCAAGCAGAAGCTGCCAGACCGCATCGCTTCCGGGCAGATGCCGGACCTCGA AGGCTTGCCGCCGATGTTCCGCGAGTTCTTCGAGCGCAACATGCCGCAGCAGCCGCGTTCGCCGCGCGGCGATCGCCAGCGTGAAGCGCAGTCGCTGGGG TCGGGCTTCATCATTTCCAGCGACGGTTACGTGCTGACCAACAACCACGTGGTCGCCGACGCCGACGAAATCATCGTCCGTCTGTCCGACCGCAGCGAGT TGCAGGCCAAGCTGGTCGGCACCGACCCGCGCACCGACGTGGCCTTGCTCAAGGTCGAGGGCAAGAACCTGCCGACGGTCAAGCTGGGCGACTCCGAGAA GCTCAAGGTGGGCGAGTGGGTGCTGGCGATCGGCTCGCCGTTCGGCTTCGACCATTCGGTGACCAAGGGTATCGTCAGTGCCAAGGGGCGCACCCTGCCC AACGACACCTACGTGCCGTTCATCCAGACCGACGTAGCCATCAACCCGGGCAACTCCGGCGGCCCGCTGTTCAACATGAACGGCGAAGTGGTGGGGATCA ACTCGCAGATCTTCACCCGGTCGGGTGGTTTCATGGGCCTGTCCTTCGCCATTCCGATCGACGTGGCGATCGATGTTTCCAACCAGCTGAAGAAAGACGG CAAGGTCAGCCGTGGCTGGCTGGGCGTGGTGATCCAGGAGGTCAACAAGGACCTGGCTGAATCCTTCGGCCTCGACAAGCCGGCCGGCGCGCTGGTGGCC CAGGTGCTGGAAGACGGCCCTGCAGCCAAGAGCGGCCTGCAGGTGGGCGACGTGATCCTCAGCATGAATGGCCAGCCGATCGTCATGTCGGCCGACTTGC CGCACCTGGTCGGCACGCTGAAGGATGGCGAAAAGGCCAAGCTGGAGATCATCCGCAACGGCAAGCGCCAGAACCTGGATGTGACCATTGGCGCGATGCC CGATGACGACGCCGATATCGGCACCGGCAGCAGCGCCGAGCGCAGCAGCAACCGCCTGGGCGTCTCCGTTTCGGATTTGACCGCCGAGCAGAAGAAATCG CTGGAACTCAAGGGCGGTGTGGTCATCAAGGAAGTCCAGGATGGCCCGGCGGCGATGATCGGCCTGCGTCCGGGTGACGTCATCAGCCACCTGAACAACC AGGCGATCGCTTCGGCCAAGCAGTTCACCGAAATCGCCAAGGAGTTGCCGAAGAACCGTTCGGTGTCGATGCGCGTGCTGCGTCAAGGGCGCGCGAGCTT CATCACCTTCAAGCTGGCTGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGGGCTTCGAGGGAGGAAAGGGCAGCTTCGGCTGCCCTTTTTCATGAGATTTCACAATTCCACGGGGTAATCGCTGTGTACTGTGCGACAGAGGAATCT CCCATATCCTTGCGGCTTGAGGTACAATTCCCGGCTATTTTTCGGCGGGCGTTCCGGCTCGCAGCCTTTTCGAGTGTTGACCCGTGAGTGATTTGAGTCA TATCCGCAATTTCTCCATCATCGCCCACATCGACCATGGCAAGTCGACGCTGGCCGACCGTTTCATCCAGATGTGCGGTGGCCTGTCGGCACGCGAAATG GAAGCCCAGGTCCTCGATTCCATGGACCTTGAGCGTGAACGCGGTATCACCATCAAGGCCCACAGTGTCACGCTGAACTACAAGGCGCAGGACGGCAAGG TCTACCAGCTCAACTTCATCGACACCCCCGGCCACGTCGACTTCACCTATGAAGTCTCGCGCTCGCTGGCGGCCTGTGAGGGTGCCTTGCTGGTGGTGGA
|
|
| Amino Acid Sequence |
>protease Do
MSIPRLKSYLSMFAAVLMLGQVLSAQAEEALPDFTTLVEQASPAVVNISTKQKLPDRIASGQMPDLEGLPPMFREFFERNMPQQPRSPRGDRQREAQSLG SGFIISSDGYVLTNNHVVADADEIIVRLSDRSELQAKLVGTDPRTDVALLKVEGKNLPTVKLGDSEKLKVGEWVLAIGSPFGFDHSVTKGIVSAKGRTLP NDTYVPFIQTDVAINPGNSGGPLFNMNGEVVGINSQIFTRSGGFMGLSFAIPIDVAIDVSNQLKKDGKVSRGWLGVVIQEVNKDLAESFGLDKPAGALVA QVLEDGPAAKSGLQVGDVILSMNGQPIVMSADLPHLVGTLKDGEKAKLEIIRNGKRQNLDVTIGAMPDDDADIGTGSSAERSSNRLGVSVSDLTAEQKKS LELKGGVVIKEVQDGPAAMIGLRPGDVISHLNNQAIASAKQFTEIAKELPKNRSVSMRVLRQGRASFITFKLAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|