Pseudomonas plecoglossicida NB2011, L321_24456

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.30.42.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00987 PDZ_serine_protease - - 272 361 4.87775E-26
Pfam PF13180 PDZ domain IPR001478 PDZ domain 274 363 2.0E-16
Pfam PF13180 PDZ domain IPR001478 PDZ domain 385 466 1.7E-9
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 29 364 1.2E-97
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 170 194 4.2E-53
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 204 221 4.2E-53
SMART SM00228 pdz_new IPR001478 PDZ domain 272 354 1.2E-15
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 109 121 4.2E-53
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 226 243 4.2E-53
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 241 388 9.0E-11
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 243 368 1.48E-23
Gene3D G3DSA:2.40.10.120 - - - 31 265 2.8E-86
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 312 324 4.2E-53
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 33 470 0.0
FunFam G3DSA:2.30.42.10:FF:000037 Periplasmic serine endoprotease DegP-like - - 270 371 2.7E-34
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 270 372 1.6E-28
SMART SM00228 pdz_new IPR001478 PDZ domain 384 463 4.7E-10
Pfam PF13365 Trypsin-like peptidase domain - - 100 233 3.9E-35
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 130 150 4.2E-53
CDD cd00987 PDZ_serine_protease - - 385 470 5.86661E-18
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 385 472 1.25E-14
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 11 281 2.19E-70
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 381 474 4.7E-18
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 32 265 2.6E-101

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.