Pseudomonas plecoglossicida NB2011, L321_04106
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NB2011 genomic scaffold PT1_scaffold47, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGTCATCGACCGCCCACTCCCGGTGTTGCTCAACCCGTGAACCAGATGCCCTGGCTGTCTTCCTGGCAGCCCAAGGCCTGCAACGCCTCACCCTCACAC GGGCCGGCCACGCATTCGCCACTTTCGATCAGGAACAGAGCGCCGTGATGGGCGCAGTGGATCAAGCTGGCGCTGTCATCAAGGAAGGCGTCCGCTGTCC AGTTCAAGGGGATGCCTCGGTGCGGGCAGCGATTACGATAGAGATGCACCGTGCCTTGGCGGCGCACGCCGAACAGTTCGATGCCGTCTACGCTGAAGGC GCGGCTGTGGCCTTCGGCCAGCGCTGCGGAAGTACAAAGGAAGTGCATTGCAAGAACGACCCGCGAAACAAGGGATAACTTGACGCTTCAATGCGAATAA TTATCAAATTGCCCGCATTCCCTGCGCCCGAGCCGCTATGGTTACGCAGTTCCGCTACCCGCCACAAGGCTGGCAGCCCGCCTTCAGAAGGAATCCGATG
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| DNA Sequence for Gene |
>L321_04106
ATGCGCCGTCCCGCCGCCATGCTCGCCCTGTGCGCAGCCCTCGTAGCTTGCTCCCACGTCTTCGCGGGTGAATTGCCACAGCGCTGGGTCAGTGCCGGCG GGGCGTTGAGCGAGTGGATCAGTGAACTGGGCGGCGAGCCACGCCTGGTAGGCGTCGACACCACCAGCCAGCACCCCGAATCGCTCAAAGCGCTGCCGAG CATCGGCTATCAGCGCCAGCTGTCGGCCGAGGGCATTCTCAGCCTGCGCCCGGACTTGCTGGCTGGCACCGAAGAAATGGGCCCGCCACCGGTGCTGGCG CAGATCCGTAGCGCCGGCGTGCGCGTCGAACTGTTCTCCAGCCAGGCCGACCTCGCGGCTGTCGATGCCAACCTCAAGCACCTGGGCGGGTTGCTCGGCG CCGAGCAGAAGGCCGCGCAGCTTGCCTCGCGTTATCACCAGCAGATCGAGGCGCTGCAACTGAAGGTCAAGCAGGCCCAGGTCAGCCACAAGGCGCCAGG CGTGCTGCTGCTGGTCGGCCACGCGGGGGCCAAGCCACTGATCGCAGGTCAAGGTACCGCGGGCGACTGGCTGTTGCGCCAGGCGGGGGCGCGCAACCTG GCAGAGCATCAGGGCTACAAGAACTTCTCCAATGAAGCGCTGGCGGCGCTGGACCCGGATGTGCTGGTGGTCTCCGATCGTGCCATGGTGGGTGACCAGG CCTTGCAAGCCCTGCTCAAGGAGAATCCGGCTCTGGCCGCGTCCCGGGCCGCGCGCGACAAGCGCCTGGTAGTGCTCGACCCGACGCTGCTGGTAGGCGG CCTCGGCCCACGGTTGCCGGCGGCCTTGCAGGACCTGGCGGCGACGTTCTACCCGGCCAGCATCGCTCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCAACGGATCCAACCGCGCGCGCTGTTCATTGGCCTGGGCTTGCTGTGTGTGCTGGCGGTCTGGCTGTCGCTGGCCCTGGGGCCGGTCAGCCTGCCGCT GTTCGATACCTTGCGTGCGGGTTTGCGCTTGCTCGGGCTGCCCATCGCTGGCGACGGCCTGGAGCAGGCGGACATGATCCTCGGCCAGATCCGCCTGCCT CGTACCTTGCTCGGCCTGGCGGTGGGGGCGGTGCTGGCGCTGTCAGGCGTGGCCATGCAGGGGCTGTTTCGCAATCCGCTGGCCGATCCTGGCCTGGTCG GTGTGGCCAGTGGCGCAGCGCTGGGGGCGGCGGTGGCGATTGTCGGCGGCAGCTGGCTGGTTGGCATACCGGAGTGGTTCGCCCCCTACCTGTTGTCGGT CTGCGCCTTCGTCGGCGGACTGGGAGTGACTGCGCTGGTCTATCGGCTGGGGCGCCGCGATGGGCAGACCAACGTCGCGACCATGCTGCTGGCCGGTATC
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| Amino Acid Sequence |
>periplasmic binding protein
MRRPAAMLALCAALVACSHVFAGELPQRWVSAGGALSEWISELGGEPRLVGVDTTSQHPESLKALPSIGYQRQLSAEGILSLRPDLLAGTEEMGPPPVLA QIRSAGVRVELFSSQADLAAVDANLKHLGGLLGAEQKAAQLASRYHQQIEALQLKVKQAQVSHKAPGVLLLVGHAGAKPLIAGQGTAGDWLLRQAGARNL AEHQGYKNFSNEALAALDPDVLVVSDRAMVGDQALQALLKENPALAASRAARDKRLVVLDPTLLVGGLGPRLPAALQDLAATFYPASIAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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