Pseudomonas sp. GM25, PMI24_03971
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM25 PMI24_contig_74.74, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGAAGTCCAGGCTTTTGAAAGCCTTGGCGTAGTCGAAGTCCTTGCCCAGCGGATCGGATGCGGGCGAGTGCTGACTCAGGATTTTCAGGTTCAGTTGA TTCGGCCACCAATCGCGGTTCGTCGTGCCACCGCCGGCGGCGTGATTGAACGGGCATTTCGATTCATTTGCCATGTTCGGGTCCTTATCAGGTCTTCTGC GGCCGGCTCGTGCCGACTTCGGAGTAGTAAGGCTAGACCCGACTCGGCGAGTCAGCTAATAGGCCGACTATTGGTGCCTGATAGGCGCAGTCTCTTACGC GAAGTCTCGTGATCCGGTGCCGGGCAGGGCGCTGAAATGCCCGTGCTTGAGCGATGGTTTGCAATTGTGTGGAAGAAACGTGATGGCCATTGGAAATGTT ATTGTATAACATAAAAATGATTTCATCTGATCGATGCCGGCAACACACCCTCTGTAGCGCCGGCATCGATCCTCACTTTTCTGCCTGACGGATTTCTGAA
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| DNA Sequence for Gene |
>PMI24_03971
ATGCCTTCCCGTTTCCACACCTTCCAACCTCGCCTGACGCTCATGGCCTCGGCGCTGCTGATCGCTTCGCCCACATTCGCCGCCGACCCGCTGGAACTGC AACCGCAAGTCATCACCGGCAATCCGCTGGGCAGTCAGACCCTGGCCTCTCCCTCAACCGTGTTGAGCGGCGACAGCCTGACGCTGCAACAAAAGGGCAG CCTCGGCGAAACCCTGAACAAGCAGCCGGGTGTGTCGTCGTCCTACTTCGGCCCAGGTGCCAGTCGCCCGATCATTCGCGGGCAGGACGGCGATCGCATT CGCATCCTGCGCAACGGCGTCGGCGCGCTGGACGCTTCGTCGCTGTCCTACGATCACGCGGTGCCGCTGGATCCGGTCAACGTCGAGCGCATCGAAATCG TCCGTGGCCCGGCGGCTTTGCTGTACGGCGGCAGCGCCATCGGCGGGGTGGTCAACACCTTCGACAACCGCATCCCGACCGAAGCCATCGAAGGCATTCA CGGTGCTGGAGAGTTGCGCTACGGCGGCGCCGACACCACTCGCAGCAGCGCCGGCAAACTCGAAGCCGGTAACGGCCAGTTCGCCTTGCACCTGGACGCC AGCGCCCGCGAGTTCAATGACCTGAAAATCCCCGGCTACGCCAAAACCGGCCGTGAACGGGCGAACGACGATGGCGATTCGAAAAAACATCGGCTGGCCA ACAGCGACGGTCGTCAGGACGGCGGTGCGGTGGGCGGTTCCTACACCTGGGATGACGGTTACGCGGGGCTGTCGTACAGCAATTACGATTCGAATTACGG CTCGCCGGCCGAAGACGATGTGCGCATCCGCATGGAGCAGGAGCACTACGCGTTCGCCTCGGAAATCCGCAACCTCGAAGGTCCGTTCAGCTCGGTGAAG TTCGATGCTGGCTACACCGATTACCAGCACAGGGAAATCGAGGGCGGCGAGGTCGGCACCACGTTCAAGAACAAGGGCTACGAAGCGCGGGTCGAGGCCC GGCATCAGCCGCTGGGGCCGTTCAACGGGGTGATTGGCGCACAAGTCAGTCGCAACGAATTCTCGGCGCTGGGCGAAGAAGCCTTCGTGCCGCACACCGA TACCGACGCCGGTGCACTGTTCATTCTCGAAGAGCTGCAAGCCACGGATCGTCTGCTGTTCACCCTCGGCGGACGCCTTGAACACACCACGGTCGACCCG GACGCCAAGGGCAACGAGCGTTTCGCCAATGCCGATCGCTCCAGCAGTTTCACCGCCGGCAGCCTGTCATCCGGTGCGGTGTACACGCTGACGCCGATCT GGTCGGTCGCAGCCACGCTGGGCTACACCGAACGCGCGCCGACGTTCTATGAGCTTTACGCCAACGGCGCCCACGTTGCCACGGGCACTTATGAAGTCGG GGATGCGGGACTGTCGAAAGAGAAAGCCGTCTCCAGCGACCTGGCCCTGCGTTTCGATAACGGCACCCACAAGGGCAGCGTCGGCGTGTTCTATAGCCAT TTCTCCAACTACATCGGCCTGCTCGGGACAGGGCGCACGCTTAACGATGAAGGGGAGGAGGACGCCGACGGCATCCCCGAATACACCTACTCCGGCGTGC GGGCGCGCTTTAGCGGCATCGAAGCGCAGGATCGCTGGACCCTCGGCGAGAACGCCTACGGCAAGTTTGCGCTGGAGCTATCGGGCGACTACACCCGCGC CAAGAACCTCGACAACGGCCAGGACCTGCCGCGCATCGCACCGCTGCGGTTGAACACCGGGCTGTTGTGGGAGCTGGATCGCTGGCAGGCGCGCATCGAT GTGGAACACGCCAGTTCCCAGCACCGTGTGCCGGACAACGAAAGCAGCACCGACGGCTACACCACGCTGGGTGCGAATGTGGGTTATCACTTTGATGTCG GCCAGAGCAAATGGCTGGCTTTCGTCAATGCCGAGAACCTGACCAACCAGACCGTGCGTTATGCCAGCTCGATCCTGCGGGATATTGCGCCGGCAGAAGG GCGCAGCATTCAGGTCGGACTGCGCACCACGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGTTCAGGCCGGACGGGCGCCAGCGTCGTTGCGACGCTGGCGTTGATCTCAACTCGATTGAGCGGTGTCTTCTTCCGGGATCTCGTCCAGCAGATCCTG TTGCCCCGGCAGTTCGGTGATCACGCTGAAATCACTGACTTCCACGGCGCCCAGGCCATACCCCAACAAGTGGAACGAGAACGCCTTGCGCGGTTGCGGG TTGTCGAAACTGAAATCCATCTCCAGCGGCTGATCCGCCGTGGCGACCATCTCGGTCGGCAGGCCCAGTTGCACGTCCTGCTCGAACTCCTTGGCCTTGA GCTGAATGTACGCCGCCTGCTGCGGATCCACCGAACGCACGGTCAGGCGCACGCGGGTGTGGGAGCCTTTTGGCATCTCCAGGTATTGCGCGCCGATCAG GTTGTCAGCCCAGTCATCCTTGATCTGCGCTTGCAGCGGAATGACGTTGGCGCTGCCGAACTGATAGCGCTGGTTGAGCGGAGTACGCAGCAGCGACAGA
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| Amino Acid Sequence |
>TonB-denpendent receptor
MPSRFHTFQPRLTLMASALLIASPTFAADPLELQPQVITGNPLGSQTLASPSTVLSGDSLTLQQKGSLGETLNKQPGVSSSYFGPGASRPIIRGQDGDRI RILRNGVGALDASSLSYDHAVPLDPVNVERIEIVRGPAALLYGGSAIGGVVNTFDNRIPTEAIEGIHGAGELRYGGADTTRSSAGKLEAGNGQFALHLDA SAREFNDLKIPGYAKTGRERANDDGDSKKHRLANSDGRQDGGAVGGSYTWDDGYAGLSYSNYDSNYGSPAEDDVRIRMEQEHYAFASEIRNLEGPFSSVK FDAGYTDYQHREIEGGEVGTTFKNKGYEARVEARHQPLGPFNGVIGAQVSRNEFSALGEEAFVPHTDTDAGALFILEELQATDRLLFTLGGRLEHTTVDP DAKGNERFANADRSSSFTAGSLSSGAVYTLTPIWSVAATLGYTERAPTFYELYANGAHVATGTYEVGDAGLSKEKAVSSDLALRFDNGTHKGSVGVFYSH FSNYIGLLGTGRTLNDEGEEDADGIPEYTYSGVRARFSGIEAQDRWTLGENAYGKFALELSGDYTRAKNLDNGQDLPRIAPLRLNTGLLWELDRWQARID VEHASSQHRVPDNESSTDGYTTLGANVGYHFDVGQSKWLAFVNAENLTNQTVRYASSILRDIAPAEGRSIQVGLRTTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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