Pseudomonas sp. GM25, PMI24_03971
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd01347 | ligand_gated_channel | - | - | 51 | 678 | 3.34257E-56 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 213 | 245 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 213 | 236 | - |
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 164 | 678 | 9.2E-69 |
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 44 | 160 | 1.8E-28 |
| SUPERFAMILY | SSF56935 | Porins | - | - | 44 | 678 | 5.19E-95 |
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 202 | 676 | 1.2E-45 |
| PANTHER | PTHR30069 | TONB-DEPENDENT OUTER MEMBRANE RECEPTOR | IPR039426 | TonB-dependent receptor-like | 20 | 678 | 2.9E-72 |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 47 | 150 | 2.3E-19 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.