Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0120315
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00025.25_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGAGCCCAAGGTGGTGATTCTCGATGAGGCCACCTCGGCGCTGGACGCGGCCACCGAGTACAACCTGCACCTGGCCTTGGCGCGCTTCCTCAGCGGGCG CACCACGCTGATCATCGCCCACCGCCTGTCGGCGGTGAAGCAGGCCGACCGCGTGCTGGTGTTCGATGGCGGGCATGTGGCCGAAGATGGCGGCCACCAG CAGCTGATTGCCGAAGGTGGCTTGTATGCCAAGTTGTATGGGCATTTGCAGCAGACCTGATCGAGTCACAAGCTGCAAGCCACAAGCCACAAGCCACAAG CCACAAGCTACAAGCTACAAGCCACAAGCTGCAAGCTTAGTGCGCGAAAGTCTGCCTGTTCTTGTAGCTTGTAGCTTGTAGCTTGTAGCTTGTAGCTTGT AGCTCGCAGCTCAAAATTCCCCTCCACACAGATGGCAAATGGCCTACGCTGAGCTTGTCTGGGTTGAATCGAGCCTTATCTGCTCTGTGACAGGGACTAC
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| DNA Sequence for Gene |
>Q378_RS0120315
ATGAAGGGAAATCGCACGCTAGAGGCGCCAAGGTTGCTGGGTATCATCTGGCCCTTTATCGCCGTTGTAGTCTTCCAGGTCTTGCTGGGCAGCCTCAGTC TGTACGCGCTGTCGGCCGTGCGTGCCTATGTCGCGGGCGAGAGCTTGTGGTCCAAGGCCCAGAAAGACGCCATCTACTACCTGAACCTGTATGCCGACAG CGGCGACTCGCGCATCTACGAGCGCTATCGCCAGGTCGTTAGCGTGCCACAGGGCGATCACCTGCTGCGCGAGGTGCTCGACCAGTCCAGCCCGGACCTC GAGGCGGCACGCCAGGCTGTCTTGCAGGGCGGCAACCACCCGGACGACGTCGAGCGGATCATCTGGTTCTACCGCAACTTCCGCCAGGTCAGCTACATGC AGACGGCCATCGCTTACTGGAACATCGGCGACAAGTACCTGAACGAACTGGACGTGCTGGCCAACGAGATGCGCGATGGCTTCGCCAAGGGGCAGGCCAC GCCTGCTCGGGTCAGCGCATGGCGAGCTCGCATCGTCGCCGTCAACGAGGGCGTGACGCCTGCGGCCAAGGCTTTCAGCGATGCCCTGGGCGAAGGTTCG CGCATGCTGTTGCGGGTGCTGCTGATCACCAACCTGGCGACCGCCTTGTTCCTCATTACCATTGCGTGGCGCCGCTCGAGCAAGTTGCTGGCTCAGCGCC AGGCATTCGCCAGTGCTCTGCAGGAAGAAAAGGAGCGGGCACAAATCACGCTTCAGGCGATCGGCGATGCGGTGATCACCACCGATGTCGATGGCTGCAT CGTCTACATGAACCCGGCCGCCGAACAGCTGACCCATTGGCAGGCCGGACAGGCCCAGGGCGTGCCCTTGACGGCGCTGTTCAGCCTGGTCGAGGAGCAG GCTGAAGACGATGGCGCTACGCTGCTCGAGCAGGTGCTCAGCGGCAGCCTGAAGGGTGGGTCCGAGCATGCCAAGCTGATTCAGCGCCTGGATGGCAGCA CGGTTTCGATCAACCTGGTTGGCTCGCCGATCATCAACGACGGGCAACTGGCCGGCATCGTGCTGGTGCTGCACGACATGACCCAGGAACGCCAGTACAT CGCCAACCTGTCGTGGCAGGCCACCCACGACGCCCTGACCGGCCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAATGGCCTGGCG CGTCAAGCCGGGCGGCACGCGTTGATGTTCCTGGACCTCGACCAGTTCAAGCTGGTCAACGATACCTGTGGCCATGCCGCCGGCGATGAACTGCTGCGGC ACATCTGCGCCGTGCTGCAGTCGGGGCTGCGCGAGGGTGACACCTTGGCCCGGCTGGGCGGGGACGAATTCGGCGTGCTGCTGGAAAACTGCCCGTCCGA TCAGGCCGAGCGGATTGCCGAAAGCCTGCGCCAGGCGGTGCAAACCTTGCACTTCGTGTGGAAGGGCAGGCCATTCGTGACCACCGTCAGTATTGGCCTG GTCGGCCTGGCGCAGGCGCCCACCACCTTGGAAGCTTCCCTGCGCGCAGCCGACATGGCGTGCTACATGGCCAAGGAAAAGGGGCGCAACCGGGTGCAGG TGTATCACGCCGATGACAGCGAGCTGTCCATGCGTTTCGGCGAAATGGCCTGGATCCAGCGCCTGCATGTGGCCCTGGAGGAAAACCGCTTCTGCCTGTA TGCCCAGGAGATTGCTCCGCTCACCTCCATCGAAGGGCCGGGCCATATCGAAATCCTGCTGCGCCTGCATGACGAAAGCGGCCGTACCATCCTGCCCGAC AGTTTCATCCCGGCAGCCGAACGCTATGGCCTGATGACCGCCCTCGACCGCTGGGTGGTGCGCAACGTGTTCCAGGTCATCCGCCAGAGCCTGGACGAGG GCCGGGATGGGCCCTTGGCGATGTGTGCGATCAACCTGTCGGGGTCGAGCATCGGTGATGACATGTTCCTCGAGTACCTGCAGCGGTTGTTTGTCGAATA TGCCATTCCGCCGCGGATGATCTGTTTCGAGATCACCGAAACCAGCGCTATCGCCAATCTGGGCAGCGCCATCCGGTTCATCAACGAATTGAAAAAGCTG GGTTGCAGGTTCTCGCTCGACGACTTCTGTGCCGGGATGTCGTCATTCGCCTATTTGAAACATCTTCCCGTGGACTTCTTGAAGATCGACGGAAGTTTTG TCAAAGATATGCTGGATGATCCGGTCAATCGGGCCATGGTCGAGGTGATCAACCACATTGGCCACGTCATGGGCAAGCGGACCATCGCCGAGTTCGTGGA AACACCGTTGATCGAGCAGGCCTTGCAGGAGATCGGCGTCGATTACGCCCAGGGCTATCTGATCGAAAGACCGCAGGTGTTCACCGGCGACAGTCTGCAG CGCCAACGGATCGCTGCACGGCCCCTGCTGCATCGGGCGCCTGGAACCTTTCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCTCAATCGGCAAATCACAGGGATCAAGGAGCTGAAAGTGATTGATGCATTCGTTCGTATCGGGCCTTTGATGGACCCGGCCAGTTACCCCCAATGGGC TCAACAATTGATCGAGGACTGCCGGGAGAGCAAGCGCCGGGTGGTCGAGCATGAGTTCTATCAGCGCTTGCGCGACGGCAAGCTGCGCCAGTCGACCATT CGCCAGTACCTGATCGGTGGCTGGCCGGTGGTCGAGCAGTTCTCGCTGTACATGGCCCACAACCTGACCAAGACCCGCTACGCCCGCCACCCCGGTGAAG ACATGGCGCGGCGCTGGCTGATGCGCAACATCCGCGTCGAGCTCAACCATGCCGACTACTGGCTGCACTGGTGTCAGGCCCATGGCATCCACCTGCACGA ACTGCAGGGCCAGGACGTGCCGGCGGAGCTCAACGGGCTCAACGACTGGTGCTGGCGGGTGTGCAGCACCGAGTCGCTGGCGATCGCCATGGCAGCGACC
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| Amino Acid Sequence |
>PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
MKGNRTLEAPRLLGIIWPFIAVVVFQVLLGSLSLYALSAVRAYVAGESLWSKAQKDAIYYLNLYADSGDSRIYERYRQVVSVPQGDHLLREVLDQSSPDL EAARQAVLQGGNHPDDVERIIWFYRNFRQVSYMQTAIAYWNIGDKYLNELDVLANEMRDGFAKGQATPARVSAWRARIVAVNEGVTPAAKAFSDALGEGS RMLLRVLLITNLATALFLITIAWRRSSKLLAQRQAFASALQEEKERAQITLQAIGDAVITTDVDGCIVYMNPAAEQLTHWQAGQAQGVPLTALFSLVEEQ AEDDGATLLEQVLSGSLKGGSEHAKLIQRLDGSTVSINLVGSPIINDGQLAGIVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALNGLA RQAGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCPSDQAERIAESLRQAVQTLHFVWKGRPFVTTVSIGL VGLAQAPTTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGEMAWIQRLHVALEENRFCLYAQEIAPLTSIEGPGHIEILLRLHDESGRTILPD SFIPAAERYGLMTALDRWVVRNVFQVIRQSLDEGRDGPLAMCAINLSGSSIGDDMFLEYLQRLFVEYAIPPRMICFEITETSAIANLGSAIRFINELKKL GCRFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLIERPQVFTGDSLQ RQRIAARPLLHRAPGTFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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