Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0120315

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 549 805 2.1E-79
SMART SM00052 duf2_2 IPR001633 EAL domain 547 796 7.6E-63
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 379 536 8.63E-49
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 243 366 3.7E-11
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 366 537 2.6E-56
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 370 534 8.1E-43
CDD cd01948 EAL IPR001633 EAL domain 553 792 7.68498E-82
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 553 794 5.49E-70
SMART SM00091 pas_2 IPR000014 PAS domain 245 311 1.6E-6
CDD cd01949 GGDEF IPR000160 GGDEF domain 375 533 2.1597E-60
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 232 361 2.44E-18
PANTHER PTHR33121 CYCLIC DI-GMP PHOSPHODIESTERASE PDEF - - 217 792 1.0E-129
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 374 531 1.3E-44
Pfam PF00563 EAL domain IPR001633 EAL domain 553 791 2.2E-59
CDD cd00130 PAS IPR000014 PAS domain 254 360 7.63068E-8
Gene3D G3DSA:3.30.450.20 PAS domain - - 235 361 6.5E-21
SMART SM00267 duf1_3 IPR000160 GGDEF domain 363 535 2.8E-62
Pfam PF00989 PAS fold IPR013767 PAS fold 251 360 4.5E-12
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 369 537 1.4E-46

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.