Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0110860

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.2300 - - - 164 295 3.6E-30
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 170 283 1.3E-28
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 127 458 1.3E-86
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 296 458 3.5E-52
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 172 283 2.6E-23
Gene3D G3DSA:3.40.50.2300 - - - 32 163 3.6E-6
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 299 453 1.6E-42
CDD cd00156 REC - - 173 273 7.37494E-26
SMART SM00267 duf1_3 IPR000160 GGDEF domain 286 457 4.1E-57
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 302 456 1.18E-46
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 52 162 1.05E-6
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 292 457 1.5E-49
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 294 456 1.4E-46
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 161 299 2.56E-33
FunFam G3DSA:3.40.50.2300:FF:000346 Diguanylate cyclase response regulator - - 167 295 8.9E-54
CDD cd01949 GGDEF IPR000160 GGDEF domain 299 454 1.57388E-60
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 46 158 0.15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.