Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0103635
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCTGGCGCTCAACGCGGCGATCCAGGCCTCCCTGGCTGGCGAAGCCGGGCGAGGCTTTGCCGTGGTTGCCGACGAAGTGCAGCGGCTGGCCGAGCGCT CGTCCTCGGCCACGCGGCAGATCGAGGCGCTGGTGCGGACCATTCAGGCCGACACCAACGAGGCGGTGATCTCCATGGAACAGACCACCGCCGAAGTGGT GCGCGGTGCGCGCCTGGCCCAGGACGCCGGGGTGGCGCTGGCGGAAATCGAAGGGGTGTCGCAGACCCTGGCCGAACTTATCCACAGCATCTCCGACGCC GCGCAGTTGCAGACCTCATCGGCAGGGCAGATTTCCCACACCATGGCCGTCATCCAGCAGATTACCGCGCAGACCTCCGCCGGCTCCGGCGCCACCGCCG ACAGCATCCGTCACTTGGCACGCATGGCCAGCGAGATGCGCCGTTCGGTGTCTGGGTTCACCTTGCCGGCCCCGGCCGAGCGGCGCTGAGGGGCATGTCC
|
|
| DNA Sequence for Gene |
>Q378_RS0103635
ATGGCTTCAGCAGCAGTAAACCCCGAGCGCCACGACACGGTCGCCCTGGCCTGGACCCGAGCGGCCATCCTCGACTGCCTGGGCCAGGCGCGCCAGGCCC TTGAGCGCTTTGCCGGCGAGACCGACGACCGCTCCATCCTGGCGTTCGTGGTGGACAACCTGCACCAGGTGCACGGTTGCCTGCGCATGCTCGAATTGCG CGGCGCCACACGCCTGGCCGAGGAGCTCGAGCTGCTGGCCAAGGCCTTGGCCGATGGCCAGGTGAGCCCGCGTGGCGATTGCCTGGGGCCGCTGTTTCGC GGGCTCGAGCAACTGCCCTCGTATCTTGAGCGGCTGCGCGGTGCGCGGCATGACCTGCCGCTGGTGATGCTGCCGCTGCTCAATCAGCTGCGTGCCTGTC GCGGCGTCGAACCGCTGGCCCAGGCCAGCCTGATCGGCGGCGCGGCCCAGCGCTTCGCGGGTTCCGACGACCTGGCCAACCTCGACCTGTCGCTGGGCAA CTGGCGTGAACAGGTGCAGGCCGGGCCCGGGCGTGATGCCTTGCGTTCGGTGGTGACGGCACTGTGCGATGACCTGGTGCGGATCAAGGAACGCCTGGAC CTGTTCGTGCGCAGTGATCGGCAGCACATCGAACAGCTGGACGCATTGCTCGCACCGTTGCGGCATGTGGCCGACACCTTGGCGGTACTGGGCTTCCAGC AGCCGCGACGGGTCATCATCGATCAGGTCCTGGCCTTGCAGGCCCTGGCCCAGGGCGAGCGGGCGGTGGATGACCCGGTGCTGATGGATGTGGCGGGTGC TCTGCTGTACGTGGAAGCCAGCCTCAATGGCATGGTCGGCCCGCTCGAGGAGAACGGCCAGGGGGCTCTGCCTGGCTCGGACCTGGCAGAGATCCGCCAG CTGGTCCTGAACGAATCGTTGTCGGTGTTGCAGCAGGCCAAGGACCTGATCGGCGATTGCCTGGAATCGGGCTGGCCGCGGCAACGCCTGCAACCCTTGC CAGGGCTGTTGCAGCAGGTGCGCGGGGCATTGGCGATGCTGATGCTGCCTGCCGCCGCGCAGGTGTTCGGCGGATGTGCCCGCTATGTGCAGGGCTGGTT GCAGCACCTGGATGTGGAGCCGCCCGCTGACGAACTGGATCAGCTGGCCCAGGCGCTCAGTGCTGGCGAGTGCTACCTGCAATGGCGGGTGGCCGACCCC TTGGCCGATGGCCAGCCGTTCCTCGACATGGCCTGCTCGAGCCTGGCGGCGCTGGGCATGCCGTGCAGCCATGGCGAAGTCCTGCGCAGCCAGGATGGCA ATGGCGATGGTATCGACGACGAGTTGCGCGAGGTGTTTCTCGAGGAGGCCGGGGAGCTGCTGCCGGAAATCGAGCGCCAGTGGTTGCGCTGGCGCGCCGA CAACAACCTGCGCGAAGCCTTGCTGGAACTTCGCCGCGACCTGCACACGCTCAAGGGCAGCGGGCGCATGGTGCATGCCGAGGCCGTCGCCGAGCTGGCC TGGGGCGGCGAGCATTTGCTCAATCGCGTACTGGAGGGGCGCATGGCCCTGGCACCAGAGGGGGCCAGGGCGCTGCAACAGGTGGTCGTGCACCTGCCGG ACCTGCTGGCCGACTTCGCCGCCGGGCAGATGCCGCAGGTGACCGAGATCGAGCAGTTGGCCAGCCATCTGCATGCCCTTGCCGAGAACGACACGCCCGT CAGTGCCGACATCGAGGGCCTCGACCCGCAGTTGCTGGACATCTTCCGCAATGAAGCTCAGGGCCACCTGGCGAGCCTTGACACCTACTTGCAGGCGGCC AATGGCCGGGACACGCCGGTCAGCGATGAGCTGCAACGCGCGCTGCACACGCTCAAGGGCAGCGCCGCCATGGCCGGGGTGATGCCGATCGCTGAACTGG CCACTGCCTTCGACCGCCTGGTCCGCGAATACCGCAGTCACCAGTTACCCTTGCAGGGCGCCGAAATCGCCTGGCTGGACGCAGCGCGGGCCCAGTTCCA GCAGGGTCTGGCGCAGCTCGGCAGCACCCCGCTGGCCGCCATCGCGGGCGCGGCGCAGTTGATCGAGCAGGTCGGCGAGGCGGTGGACGAGCGCCTGGCG AGCTTGCATGACGAGCAGACCCATGCCCGGCGCAGCGCTCGCGACCCGCAGCGCACGGCCAGCTTCCTGGCCCAGGCCATGGACATTCTGCTGGATGCCG AGTCCCTGCTGTCACGCTGGCAGGAGCAGCCGGGCCAGCGCCAGTCGCTGGACAGCCTGCTCGATGAACTGACCACGCTGTGCCACGCCGCCCACCTGGC CGACCTCTGGCAGATGGACGATGTCTGTGAAGCCCTGCTGGATCTCTACGGCGCGGTGGAAGAGGGTAGCCTGGGCGCCGATGGGCACTTCTTCGCCCAG GCCCGGCAAGCCCATGAAGCACTGCTCGACATGCTTGACCAGGTCGCTGCCGGCCAGGAGGTGACGCCGCGTCCCGACTGCGTCGACAACCTGCGCGGCC TGCTGGCCGGTGCCCTGGCGCCGGAGGCCACGGGCCTGGTGGCGCCAGGCTCGGTGACAGCGCTGCCGACGGCGATGGAAGCGGCCGAAGAGGACATCGA CAGTCCGGGTGACAAGGAGCTGCTCGAGGTCTTCTTGGAAGAAAGCTCGGACATCGTCGAAAGCGCCGCTGCCGCACTGGCGCGCTGGCAGGCCGACCCG CGCAACGGCGCCGAAGTGGACAACCTGCTGCGCGACCTGCACACCCTCAAGGGCAGTGCGCGCATGGTCGAGATCGCCGCCATCGGCGACCTTGCCCACG AACTGGAATTTCTCTACGAATTGCTGGCTGCCGGGCGCCTGCCGCCCAGCGCGCCGCTGTTCGCGCTGTTGCAGAACTGCCACGACCGCCTGGCGCACAT GCTCGATGCCGTGCGCCTGGGGCAACCGCTGCATGCGGCTACCGCACTGATCGACTACATCCGCAACTTCAGCAGCGCTGCCCTGACCGACAGCGCCGCG GGCCAGGCGCCAGCCGAAGCCGCGCCGGCCGACCTGCCCACGGCCGCGCCGGAGCGTGCGGCCGGCGACATGGTCAAGGTCGACGCCGAGCTGCTCGACG ACCTGGGCAACCTGGCCGGTGAGCACTCGGTCATTCGCGGTCGTATCGAACAGCAGGTGAACGACGCCCAGTTCGCCCTCAACGAGATGGAAACCACCCT GGAGCGCATGCGTGACCAGCTGCTGCGGCTGGACAACGAGACCCAGGGGCGGATCACCAGCCGGCAGCCATTCGAAGGCGACGCCTACGAAGATTTCGAC CCGTTGGAGATGGACCGGCATTCCCAGTTGCAGCAGTTGTCGCGGGCCTTGTTCGAATCGGCCTCCGACTTGCTCGACCTGAAGGAAACCCTGGCCCAGC GCGCGCAGGAGGCCTACGGCCTGCTGCAGCAGCAGGCGCGGGTGAACAGCCAGTTGCAGGAAGGCCTGACCGCCACCTTGATGGTGCCGTTCGAGCGTCT GGTGCCCCGCCTGCAGCGGGTGGTGCGGCAAGTGGCGAGCGAACTGGGCAAGCAGGTCGAGCTGGTGGTCGGCAACGCCGAAGGCGAGCTGGACCGCAGC GTGCTCGAGCGCATGGTCGCACCGCTTGAGCACATGCTGCGCAATGCCGTCGACCATGGCCTCGAGGCCAGTGATGTGCGCCTGGCTGCCGGCAAGCCGG AGCAGGGCATCATTGCGTTGAATCTGCTGCACGAAGGCGCCGATATCGTCATCGAAATGACTGACGATGGCGCCGGTGTACCGCTGGACGCGGTACGACG CAAAGCCATCAAGCGTGGCCTGCTGGACCCTCAGGCCAACTTGAGCGATCACGAAATCCTCCAGTTCATCCTGCGCCCCGGGTTCTCCACGGCCGAGAAG ATCACCCAGATTTCCGGGCGTGGCCTGGGCATGGACGTGGTGCACGAAGAGGTCAAGCAGCTGGGTGGCTCGATGACCATCGAGTCGGCCCAGGGCAAGG GTGCGCGCTTCCTGATCCGCCTGCCGTTCACGGTGTCGATCAACCGCGCCCTGATGGTGCACCTGGGCGAAGAGCAGTACGCCATCCCGCTCAATACCAT CGAGGGCATCGTCCGCGTACCGCCGGCCGAGCTGGCTGCCTGCTATCAGCTGGAAGTGCCGCGCTACGTGTATGCCGGCCATGAGTACCAGCTGCGTTAC CTGGGCGAGCTGTTGCAAGGCCTGCCGCGGCCCGGCCTGCTGGGGCAGAGCGTGCCGCTGCCGGTGCTGTTGGTGCACTCCCATGAGCAATCGTTCGCCA TCCAGGTCGACAGCCTGTCGCCGAGCCGCGAGATCGTGGTGAAAAGCCTCGGCCCGCAGTTCGCCGCTGTGGCGGGGTTGTCGGGCGCCACCTTGCTGGG CGATGGCCGGGTGGTGCTGATCATCGACCTGCTTGGCCAGCTGCGTGGCCAGCAACGCCGCCTGGCGCGCCTGCCGGGCGGCAGCGGGGTGCAGGGCACG CTGTTCGGCCCGTCACCGCGGCGCGCCTTGCTGGTGATGGTGGTGGACGACTCGGTGACCGTGCGCAAGGTCACCAGCCGCTTGCTCGAACGTCATGGCA TGAGCGTGCTGACCGCCAAGGACGGGGTCGACGCCATGGCCTTGCTGGACGAGCACCGCCCCGACGTGCTGCTGCTGGATATCGAGATGCCGCGCATGGA TGGTTTCGAAGTGGCCACACGCATTCGCCGCGACGAGCGGCTCAAGGACCTGCCGATCATCATGATCACCTCCCGTACCGGGCAGAAGCACCGCGACCGG GCCATGGCCATCGGCGTCAACGATTACCTGGGCAAGCCGTACCAGGAGTCGGTGTTGTTGCAGAGCATCGCCCACTGGAGCCAACAGCATGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACTGATCGCAGGCCAGCGCAGCAGCCTGACTGGCCTGCTGTTGCCATTGGGCGACCGCACCCTGGTGCTGCCGAACGTGGCCGTGGCGGAACTGATAGAC CAGCGCAACCTGTTCTGCCGGCCAGGCGAGCCCGGCTGGCACCTGGGCTGGATCGACTGGCGCCAGCAGCACCTGCCGCTGATCGGCTTCGAGGCCGCCT GCGGGGGCGACACACCGTGTGGCGAGCGGGCGCGCATCGTGGTGCTCAATGCCTTGGGTGACACCGGCTTGCGGTATCTGGCGGTGTTGCTGCAGGACAT TCCGCGTTCGTGCAAGCTCGACAGCCAGCTCAACTATGTGGATGTGGCGCTGGGCAGCCTGGAGCTGGCGGCGGTGCAGGTGGGGGAGCAGGTGGCGCGG GTGCCGGACCTGGTCGGGCTGGAAAGGCTGGTGCGTGACGCGCAATTGCAACCTGGGGTTGGGTAGGATGTGAGGCCGATGGCCCTATCGCCGGCTTGCC
|
|
| Amino Acid Sequence |
>chemotaxis protein CheA
MASAAVNPERHDTVALAWTRAAILDCLGQARQALERFAGETDDRSILAFVVDNLHQVHGCLRMLELRGATRLAEELELLAKALADGQVSPRGDCLGPLFR GLEQLPSYLERLRGARHDLPLVMLPLLNQLRACRGVEPLAQASLIGGAAQRFAGSDDLANLDLSLGNWREQVQAGPGRDALRSVVTALCDDLVRIKERLD LFVRSDRQHIEQLDALLAPLRHVADTLAVLGFQQPRRVIIDQVLALQALAQGERAVDDPVLMDVAGALLYVEASLNGMVGPLEENGQGALPGSDLAEIRQ LVLNESLSVLQQAKDLIGDCLESGWPRQRLQPLPGLLQQVRGALAMLMLPAAAQVFGGCARYVQGWLQHLDVEPPADELDQLAQALSAGECYLQWRVADP LADGQPFLDMACSSLAALGMPCSHGEVLRSQDGNGDGIDDELREVFLEEAGELLPEIERQWLRWRADNNLREALLELRRDLHTLKGSGRMVHAEAVAELA WGGEHLLNRVLEGRMALAPEGARALQQVVVHLPDLLADFAAGQMPQVTEIEQLASHLHALAENDTPVSADIEGLDPQLLDIFRNEAQGHLASLDTYLQAA NGRDTPVSDELQRALHTLKGSAAMAGVMPIAELATAFDRLVREYRSHQLPLQGAEIAWLDAARAQFQQGLAQLGSTPLAAIAGAAQLIEQVGEAVDERLA SLHDEQTHARRSARDPQRTASFLAQAMDILLDAESLLSRWQEQPGQRQSLDSLLDELTTLCHAAHLADLWQMDDVCEALLDLYGAVEEGSLGADGHFFAQ ARQAHEALLDMLDQVAAGQEVTPRPDCVDNLRGLLAGALAPEATGLVAPGSVTALPTAMEAAEEDIDSPGDKELLEVFLEESSDIVESAAAALARWQADP RNGAEVDNLLRDLHTLKGSARMVEIAAIGDLAHELEFLYELLAAGRLPPSAPLFALLQNCHDRLAHMLDAVRLGQPLHAATALIDYIRNFSSAALTDSAA GQAPAEAAPADLPTAAPERAAGDMVKVDAELLDDLGNLAGEHSVIRGRIEQQVNDAQFALNEMETTLERMRDQLLRLDNETQGRITSRQPFEGDAYEDFD PLEMDRHSQLQQLSRALFESASDLLDLKETLAQRAQEAYGLLQQQARVNSQLQEGLTATLMVPFERLVPRLQRVVRQVASELGKQVELVVGNAEGELDRS VLERMVAPLEHMLRNAVDHGLEASDVRLAAGKPEQGIIALNLLHEGADIVIEMTDDGAGVPLDAVRRKAIKRGLLDPQANLSDHEILQFILRPGFSTAEK ITQISGRGLGMDVVHEEVKQLGGSMTIESAQGKGARFLIRLPFTVSINRALMVHLGEEQYAIPLNTIEGIVRVPPAELAACYQLEVPRYVYAGHEYQLRY LGELLQGLPRPGLLGQSVPLPVLLVHSHEQSFAIQVDSLSPSREIVVKSLGPQFAAVAGLSGATLLGDGRVVLIIDLLGQLRGQQRRLARLPGGSGVQGT LFGPSPRRALLVMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLDEHRPDVLLLDIEMPRMDGFEVATRIRRDERLKDLPIIMITSRTGQKHRDR AMAIGVNDYLGKPYQESVLLQSIAHWSQQHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|