Pseudomonas mosselii DSM 17497, Q380_RS0104005 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas mosselii DSM 17497 Q380DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGTCCACCTGGCGCAGGTCCTGGTCGGCAGGCCCGCCGCCTGTGCCAGGCTCATGCGGGTCGCGAGCGCCGGTTTCATCAAACAGCGTGTCTGGGCTCA AATCGTCGAGGGTGACATTGTCCTCGTGCAGGCTATCGCTCAGGGCCTCGCCGCCGGTCATGCCGCTTTCGGCGACACGTCGGGGCGGGTAATCCTCGGC GATTTCGCGCGCCGGACGCTCGTCGCCGACACGCCCCTGGCGTTCATCGCGGCGCTCGCTGAAATCCAGTTCGTGGACACTGCCCATGCGGTCCTCGGTG TCGTCGATATCAACCTGCGGTCTTGGGTCATCGGGTCTAGGCATGAACGTTCTCCATCAGTGGGCTTCACACGGTCGACTGCCCCCACGAAGCAATAATT CAGAGTTTCTTCACAAAGCACCGCCCCACGCTTTTTTTGAACTCCACGCCGCGCCGCCACCTCCCAATCTTGAGACCCGCGAACCCTCCCGGAGCCCGCC
DNA Sequence for Gene
>Q380_RS0104005 |ligD
ATGGCCAAGCCCCTGCAGGAATACCAGCGCAAGCGCGACTTCAACGCCACGCCCGAGCCGGCTGGCAAGCGCGCCAAGCCACACTCGGCCCACGCGCTGC AGTACTGCATCCAGAAACACGATGCCAGCCACCTGCACTACGACTTCCGCCTGGAACTCGACGGCACCCTCAAGAGCTGGGCGATCCCCAAGGGCCCCTC GCTCGACCCCAAGGTTCGGCGCCTAGCAGTGCACGTGGAGGATCACCCGCTGGACTATGCCAACTTCGAAGGGCACATCCCCGAAGGCCATTACGGCGCC GGTGATGTGATCGTCTGGGACCGGGGTGTCTGGGAGCCCGAGGGCGATCCGCATGAAGCCTATGCCAAGGGCAAGCTGCGCTTTCGCCTGCAGGGCGAAA AACTATCTGGAATCTGGAACCTGTTCCGCACCCACCTGGCCGGCAAGAAAGAGCAGTGGATGCTGGTCAAGTCCCATGACGGACAGGCGCGCAGCGAAAC GGACTACCGCATCGTCGAAGCCCTGCCGGACAGCGTGCTGAGCGACCGCACCCTGCCACCACGGCGCCCAGCCAAGGCAACCGCTTCCACGCGCAAGCGC AAGGCCGGTCGCAAGTCCCTGCCGGCGCTTCTTACGCCACAGCTGGCCACGTTGGTCGACTCCCCGCCCAGCGGCGACTGGCGTTACGAAGTCAAATTCG ACGGCTACCGGATCCTGGCGCGCATCGACGGTGACGACATACGCCTGTTCACCCGCAATGGCCACGACTGGAGTACTAAGATGCCCCGCCAGGTCGAGGC GCTCAAGGCGCTGGGGCTCGATGCCGCATGGCTGGACGGCGAGATGGTGGTGGTCGACGACAACGGCGTGGCCGACTTCCAGGCCTTGCAGAACGCCTTC GACACCGAGCACGACGAACACATCACCTACTACCTGTTCGACCTGCCCTGGCTGGGCGATGAGGACCTGCGCGAACTGCCGCTACAGGCACGTCGCAACA CCCTGGCCAAGCTGCTGGATGACCACGCCTCGCCGCTGCTCAGGTACTCCGCCGATTTCAATGAGCCGATCGATTCGCTACTCGACAGCGCCTGCCAGCT GGAACTCGAGGGGCTGATCGGCAAACGTGCCGACAGCCCCTATGTCGGCCGGCGCAGCAGCGACTGGATCAAACTCAAGTGCAAGCAGCGCCAGGAATTC GTGATCGTCGGCTATACCGACCCAAAGGGTAGCCGCCACGGTTTCGGCGCCCTGCTGCTGGCCCTGCACGACCACGACAGCGGCCAGCTGCGCTACGCCG GCAAGGTCGGCACCGGCTTCAGCGCCGCCACCCTGGACAGCATCCTCGCTCGCCTGAAACCGCTGCAGACCGCCAAGTCGCCCTTGGCCAGCCCCCCCAC CGGAGCAGAAGCCCGCGGCGTGCATTGGCTCAAGCCGCAACTGCTGGCGGAAGTCGCCTACGCCCAGATGACCCGCGAAGGCATCGTGCGCCATTCGGTG TTCCACGGTCTGCGCGACGACAAACCCGCCACCGCCATCGACCTGGAGCGAGCGATGCCCGCCAAGCGCGCAGCACAGACACGACCCGAGGGCCTGGTCA ACCTGCGCCTGACCCACCCCGAGCGCGTGGTCGACGCGACCACCGGGGCCACCAAGCGCCAGGTCGCTCAGTACTACGCCCAGGTCGCCGACCGGCTGCT GCCGCAGCTCAAGGATCGGCCTGTCGCCCTGGTCCGGGCACCGGATGGCCTGGGCGGCGAGCTGTTCTTCCAGAAGAACGCCGGCCATCTGCACATTCCC CACGTGCTCAGCTACAGCAAGGCCCAGGCTGGCCAGGCGGCCATGGTGCTCAACCGCGCCGACAGCCTGCTGGGCGCGGTGCAGATGAACACGCTCGAAT TGCACACCTGGAATGCCACCACCAAGGACTTCGACAAGCCCGACCGCTTCGTCCTCGACCTCGACCCTGATCCCGCACTGCCCTGGAAAGCCATGCTCGA GGCCACCCAACTGACCCTCACCCTGCTCGATGAGCTGGGGCTGAAGGTGTTCCTCAAGACCAGCGGCGGCAAGGGCATGCACCTCGTCGTGCCGTTGACC CGGCGCGCCGGCTGGGACGAAGTGAAGGACTTCAGCCATGCCTTGGTCGAGCACATGGCCGGCCTGTTCCCTGATCGGCTCAGCGCCGTGTCCGGGCCAA AGAACCGGGTCGGGCGGATCTTCATCGACTACCTGCGCAATGGCAAGGGCGCCACCACCGTCGCCGCCTATTCGCTGCGCGCCCGCGAGGGCTTGCCGGT GTCGGTGCCGATCTGGCGTGAGGAACTGACCCAACTCAAAGGCACGAACCAATGGAACATCGGCAACCTCCAGGCCCGGCTTGCCGAGGTGGACGATCCG TGGGCCGACATGGCCAAAACCCGCCAGTCGATCACCGTGCGCATGCGCAAGCAATTGGGGATCGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGGAACCGACCCCCTTCGATCAACTGCTACACCGGCTATCTACCCGGGCGCAGCCCCTCGAACTCGAACCCTTGCTGCCGGAACTGCTGCAGGCTCTGCA GCGCGAACACCTTGACCTGCTCCCCTTGCCCGGTCAGGGGCGGACCCTGGAGCGCTGGCGGGCCCTGGCGCGGGTCGCTGCTTGCGATCTCAGCCTGGCC AAACTCTACGAGGGCCATACCGACGCCCTGGCGATCCTTGCCGAATGCGGCGCAGCCCATCATGCCGGCGAAGGGACCTGGGGCGTGTGGGCTGCGGAGC CGCCGGATGCCCGCGCCCTCATCGTCGAACGGAACGCCGAGCAGGTTCGCCTGCGAGGCCGCAAGGCCTGGTGTTCGGGAGCGTTGCAGATCGACCGTGC GCTGCTGACCGCCTGGCAAGACGACCAGCCTCAACTGGTGGCCATCGAGCTTGGCCACCCGAGCCAGCGTGTCCAGGCCGACCACTGGCAGGCTGTTGGC
Amino Acid Sequence
>ATP-dependent DNA ligase
MAKPLQEYQRKRDFNATPEPAGKRAKPHSAHALQYCIQKHDASHLHYDFRLELDGTLKSWAIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGA GDVIVWDRGVWEPEGDPHEAYAKGKLRFRLQGEKLSGIWNLFRTHLAGKKEQWMLVKSHDGQARSETDYRIVEALPDSVLSDRTLPPRRPAKATASTRKR KAGRKSLPALLTPQLATLVDSPPSGDWRYEVKFDGYRILARIDGDDIRLFTRNGHDWSTKMPRQVEALKALGLDAAWLDGEMVVVDDNGVADFQALQNAF DTEHDEHITYYLFDLPWLGDEDLRELPLQARRNTLAKLLDDHASPLLRYSADFNEPIDSLLDSACQLELEGLIGKRADSPYVGRRSSDWIKLKCKQRQEF VIVGYTDPKGSRHGFGALLLALHDHDSGQLRYAGKVGTGFSAATLDSILARLKPLQTAKSPLASPPTGAEARGVHWLKPQLLAEVAYAQMTREGIVRHSV FHGLRDDKPATAIDLERAMPAKRAAQTRPEGLVNLRLTHPERVVDATTGATKRQVAQYYAQVADRLLPQLKDRPVALVRAPDGLGGELFFQKNAGHLHIP HVLSYSKAQAGQAAMVLNRADSLLGAVQMNTLELHTWNATTKDFDKPDRFVLDLDPDPALPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLT RRAGWDEVKDFSHALVEHMAGLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELTQLKGTNQWNIGNLQARLAEVDDP WADMAKTRQSITVRMRKQLGIA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site