Pseudomonas mosselii DSM 17497, Q380_RS0104005 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0005524 | ATP binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Biological Process | GO:0006310 | DNA recombination |
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006281 | DNA repair |
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003910 | DNA ligase (ATP) activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13298 | DNA polymerase Ligase (LigD) | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 38 | 141 | 7.8E-40 |
| PANTHER | PTHR42705 | BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD | - | - | 242 | 818 | 2.3E-102 |
| NCBIfam | TIGR02777 | JCVI: DNA ligase D, 3'-phosphoesterase domain | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 5 | 160 | 7.5E-74 |
| NCBIfam | TIGR02776 | JCVI: DNA ligase D | IPR014143 | DNA ligase D | 222 | 806 | 0.0 |
| NCBIfam | TIGR02778 | JCVI: non-homologous end-joining DNA ligase, polymerase domain | IPR014145 | DNA ligase D, polymerase domain | 536 | 777 | 5.3E-86 |
| SUPERFAMILY | SSF56091 | DNA ligase/mRNA capping enzyme, catalytic domain | - | - | 198 | 394 | 1.1E-45 |
| NCBIfam | TIGR02779 | JCVI: non-homologous end-joining DNA ligase, ligase domain | IPR014146 | DNA ligase D, ligase domain | 213 | 514 | 7.6E-110 |
| Gene3D | G3DSA:3.90.920.10 | DNA primase, PRIM domain | - | - | 542 | 822 | 7.0E-94 |
| CDD | cd04862 | PaeLigD_Pol_like | IPR033651 | LigD polymerase domain, PaeLigD-type | 552 | 776 | 2.14799E-115 |
| Gene3D | G3DSA:3.30.1490.70 | - | - | - | 224 | 391 | 1.8E-44 |
| Pfam | PF01068 | ATP dependent DNA ligase domain | IPR012310 | DNA ligase, ATP-dependent, central | 214 | 393 | 2.7E-27 |
| Gene3D | G3DSA:2.40.50.140 | - | IPR012340 | Nucleic acid-binding, OB-fold | 395 | 516 | 1.3E-37 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | IPR012340 | Nucleic acid-binding, OB-fold | 396 | 514 | 3.21E-29 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 181 | 204 | - |
| Gene3D | G3DSA:3.30.470.30 | DNA ligase/mRNA capping enzyme | - | - | 235 | 350 | 1.8E-44 |
| Pfam | PF04679 | ATP dependent DNA ligase C terminal region | IPR012309 | DNA ligase, ATP-dependent, C-terminal | 412 | 508 | 1.9E-24 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 28 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 19 | - |
| CDD | cd07906 | Adenylation_DNA_ligase_LigD_LigC | - | - | 211 | 394 | 1.17761E-81 |
| CDD | cd07971 | OBF_DNA_ligase_LigD | - | - | 396 | 513 | 1.81139E-52 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.