Pseudomonas chlororaphis YL-1, P637_RS0127815
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGCACCTGGACACCATCAACCTGGACGTGCCACTGGCCGTTCCAGGCGTCGAAACCGGCCTGCTCAACCCACGCAACACCTGGGCTGACAAAGCCGCC TACGACGAAGCCGCCAAGGCCCTGGCCGGCCTGTTCATCGAGAACTTCAAGAAGTTCGACGTGAGCGACGCCATCAAGGCTGCTGGTCCGAAGCTGTAAG CATCGGGTAAGTGGTTCAGGAAGCCGCCCTTTGGGGCGGCTTTTTTGTGGGCGTCATTCAGTCCCGTTCAAATTCCAGGCGGCTTGTTCGAGCGGCTCAA TAAGCCTGATTCGACGCGACGTGTAAGGTAAATCCTGGTGTCCTGTGCAGACAGTTCAGGGCCAATCGCCTGGCCTGAGCGAAAAAGAAAAGTCGCTCGA CCAGCTCGGATTTGCCTGACAGCCAAGGTCCCCTCGTACTGGTTAACGTGAGATCCCCCGGTTGAAGACCGGGGTTTCCCAGGCGACCGAGCAAAGGACT
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| DNA Sequence for Gene |
>P637_RS0127815
ATGGCCCGCAACAAGGATGTGCCCCAGGTATGGCAGCACTACGACGCTGACGGCGGTGGTTATCGCCGCCTGCGCGATATGACCGCGAGCGAATTGGCTG AGCGTGATGAGGCGCAGCGGGGTTACGAGCAGATGCTCGCTCGCCAGCAGGCCTATGAAGAGCGGCTGGCGACTACACAGGTGGAATCGCAACCAATGCC CGTCGGTTGCGTATTTGCCAAGTCTTGCAAGCTGCCGAACGCAATCATCGACTACGTCACCCCGACGGGCTTCATACCCACTGATTCGGTGGCGAATTAC GGCGCGTTGACGCTGCTGGGCGGTCGTGAGGTCGAGGCGGGTGGGTGCGTGGCCCTCAAGCGCATCAGCGGCGCGCTGCCGGCCAATCTCGGTACCTTGA CCCTGGGTGGTGTCTCCGCGGCGGCTGGTACCACCGGCAGTGGCCTGGGGCTGATCTCCTCGGGCGTGGCGGCCGGTGCGTTGCTGGGGCTGGTGGCTTT GCTCGCTCCATCGAGCCTGGGTGATGGCGCGCTGTACAGCGAAGAGCAGCTACGCAATCTCAAGCAAGCTCGCACCCGGCTACGCCTGCGAGTTGAACAG CAGGCCGATGGCAGCCTCAAGGGCTACGGCTTCAACACCCAGGGGCGCCGCGAGTGGGAAATGATTCCGGTGGCTCAGTTCAAGGCCCGTGGTGAGCAGC AAGTGGCTGACCTGGGTGATGGCATCACCCTTATCTGGACTCCAGCTGTGGACCCTTCGAGCACTACTGGGATACCACCGCTGGAAGCGGCGCCACAGAC ACCACCGATCTGGATTTTCCCACCGACTGAGGCGGCGGAGCGGATCATCGTCAGCCCGATTTATCCGCCGGAGTATCGGGATTTTATTCTGGTGTTTCCG GTGGGGGCGGGTGTTAAGCCACTTTATGTGGTGTTAAGTGTTCCAGGAAAACTGGGCCACTATCCTCCACCCAAGGAACTAGCAGCTTTTCCTGATACTT ATTTGGTCCCTTCTAAAAACTCTGTGAGGGGTGGAGGTGCCAGGCGTAAACGCTGGTTGGATTCTAAAGGGCGGATTTATGAATGGGATTACATGCACGG TACGGTGGAACAATACGATAAGCAGGGTAGGCATTTAGGTGAGTTTGATGCCGAGACTGGCGAGCGGCTTGAGGATGCTAAACCTGGACGGAGAACAGCC AAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCATGAGGTGGTTGCGTTTGATCGAGATACCGAGCGAGTGGTATTCAGCATTGATCTGCCTGGGGAGAACCTGGAGCAGCTCACTGCTCTGATGGGATG GCAAGAGCCTGATGATCCTATCTATGAGTACGAGCTATCAGACGAACAAATAGCGGCTTTAGAGAAGCTGATAGGCCGCCACTTTCACAGTCCGGATTAC CTGTTTTTCCTGTCGTGCAGTGTGTAGTGAGATCTGTATTACTTGTCTTGAAACGGCATGGAGCAGAGCGTCATGAAATATCGGGTTGAAGCCTTTGATA AGCAGACCGAGTGCTTGGTCTTCGAGGTGGAGCTACTCGCTGGTTGCGATGAGCAGCTCAAGCGCCTGATGGAGTGGACGGTGGAGCAGCAAGGTTGGGA GGGATACGACCTGAGTGCTGATCAACTGGTGGTGCTGGAGGGTATCTCAGGGAGGAAGTTTGATATTTCGGTTTATGACTTCCAACTGACAGTAAATAGC
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| Amino Acid Sequence |
>toxin
MARNKDVPQVWQHYDADGGGYRRLRDMTASELAERDEAQRGYEQMLARQQAYEERLATTQVESQPMPVGCVFAKSCKLPNAIIDYVTPTGFIPTDSVANY GALTLLGGREVEAGGCVALKRISGALPANLGTLTLGGVSAAAGTTGSGLGLISSGVAAGALLGLVALLAPSSLGDGALYSEEQLRNLKQARTRLRLRVEQ QADGSLKGYGFNTQGRREWEMIPVAQFKARGEQQVADLGDGITLIWTPAVDPSSTTGIPPLEAAPQTPPIWIFPPTEAAERIIVSPIYPPEYRDFILVFP VGAGVKPLYVVLSVPGKLGHYPPPKELAAFPDTYLVPSKNSVRGGGARRKRWLDSKGRIYEWDYMHGTVEQYDKQGRHLGEFDAETGERLEDAKPGRRTA K
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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