Pseudomonas chlororaphis YL-1, P637_RS0122020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig73, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGATGTTCAGCTCGGGCATCGGACGGGCTTCGCCCTCGAACTCGGTGTCGACGCCCGCCATGATTTTCAGCAGGGTGGACTTACCCGAACCGTTGAGGC CCAGCACGCCGATCTTGGCGCCCGGGAAGAACGACAGAGAAATGTTTTTCAGGATTTCCCGCTTCGGCGGAACAACTTTTCCCAGCCGATGCATGGTGAA GACGTATTGAGCCATGATGAACCTAGCGTCAGTGACTGATGAATGAAGAGCGGGCGAAGCCCGGGCCAGGCCATGCGCGGCGCCGGCATTTGATCGCGAT CAATGCCTGCGTACGGAAAAAGCCTGATTGTCTGGAGCTGGAGCGCTCCCGCGTAACCGGCAAAGCTACCTCAATGGCCGGGCAAGGTCCAGCCAGCCAG GGCTGGCACTTTGCCACAACTCAAGGCATGCTAGCCGCCCTTCGGGCGTCCGGCTTATAGTGCACGTCGCGCCAGTCCAGCCAAACCGCAGGATCACAGT
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| DNA Sequence for Gene |
>P637_RS0122020
TTGTCCAATGCCACTCCGCCCTCTTCCCTGCGCGCAACTGCGCCTGCGTCCGGCTCGCCCCTGCGCGGTACCCTGAAAGGCGTGCTGGCGACCCTGGTCC TGTTGCTGCTCGCCCTGCTGTTCTGGCAACTGCTCGACCAACTGCAACAGACCCGCAAAGACCAGCGTCAACACGCAATCGACTACAACGCCGACCTGGC CGAACACATCAGCCTCAACCTGGCGCTCAATGCGCAGATCGCCCTTAACCTGCTGCCGATCATCGAGCCACCCCAGAATGCCGAACAGCAGCAACTGCTG CTGAAGAAGCTGCAACTGTCCCTGCCCGACCTGCAAAGCATCGCGCTGCTGGATGCCAAGGGCCAGCTCATCAGTGACAGCGACGCCGACGGCCAGGACG CCGCCTGGCTCGCCGAGCTGACCAGCCGCAGCCGGGGCCAGCGCTACTACTACAGCAATGCCAGCCACGGCGCGCTGGTCCAACTGCTGCTGCACCAGCC CAGCGGTGCACTCAAGAGTTACTGGGTGCTGCGCCTGGCTCCCTCCTTCGCCCAGTCCCTGAGCCCCAGCCCCGACCAGGGTTTCCAACCGACCTGGGTC ATTGAAAACCGCCTGAACCAGAAAGCCCTCAGTCGCGACGACGGCAGCAGCACCCCGGTGACCACCGACGACATAGCCAACAGCGTGCTGGTCGCGCCGC TGGGCAACAGCGACTGGCAATTGCGCGGCCTGTTCGACGATCGCGCGGTGATCGAGCAACTGTTGCCGGCGTTTATCGCCAAGTGCCTGCTGGGGCTGGC GTTCTCCCTGCTGCCGGTGATTGCGCTGCTGAACATGCGCCGCCGCCAGCGTCAGCTGCACGAAGGGCGCCGGCGCTACCAGGACATTTTCGAAGGCACC GGGGTCGCCCTCTGCGTCCTGGATATCTCCGGGCTGCCGGCATTTCTCGACAAGGCGCAACTGCACGACAGCGAACAGCTCAAGGCCTGGCTGGAGCACA ACCCACAGCAGCGCCAGCTGCTGCTGGAAGAACTGCGCGTCACCGAGGTCAATCAGGTGGCCTTGCGGCTGCTCAACGTCGACTCCTGCGAGCAGGCCTG GAAACTGCTGATCGAAGGCAGCCCGCTCCACAGCAGCGCCATCGGCAACCAGCTGCTGGAAACCGTGATCAACCAGCACAAACAGCTGGAGCTGGAAATC CGCCTCAGCGACGCCCAGGGCCATGACCAGCACTTGTGGCTGGTGCTGCGCCTGCCGGAAGACCCGGCCGACTACCGGGCGGTGATCCTCAGCATCAGCG ACATCACCAGCCGCAAGCTCATCGAGCTGTCGCTGCTGGAGCGCGAGGGCTTCTGGTCGGACGTGGTGCGCACTGTGCCGGACCACCTTTATGTGCAGGA CGTCATCAGCCAGCGGATGATCTTCAGCAACCACCACCTGGGCCAGACCCTCGGCTACAACAAAACCGAACTGCACCAGATGGGCGAGTACTTCTGGGAA ATCCTCCTGCACCCGGAAGACGCCGACCTCTATCACCGCCTGCGCCAGGAACAGCGGCATGCCGGCTACCTGCAATTGCTGCAGTGCCATTTGCGCTTTC GCCACCGCAGCGGCCAATGGCGCTGTTTCGACATCCGCGAACAGGCCCTGGCGCGGGACAAGTACGACCAGGTCACGCGCATCATCGGCGTGGCCAAGGA CATCACCGACCAGATCGAGGCCAGCGAATCCCTGCGCGACAGCGAACGGCGCTATCGCATGCTCGCCGAAAGCATCAGCGACGTGATTTTCTCCACCGAC AGCCAGATGGCCCTCAACTATGTCAGCCCCTCGGTGCAGTCGGTACTGGGCTATGACGCCGAGTGGATCTTCCAGAACGGCTGGCAATCGACCATCGCCA ACCCGCAACAGCTGACCGGCATCTATGCCCTGATGGAGCGGGTCAGCAAGGCCCTGGACAAACCCGAGCAACTGGCGCGATTGCGCAACCAGGTGCAGAC CCAGTTGTTCCTGTTCGACTGCCTGCGGGCCGACGGGCGCAAGATTCCGATCGAGCTGCGCCTGGTGCTGGTGTGGGACGAACACGGTGCCTTCGAAGGC GTGCTCGGGGTCGGCCGCGATATCAGCCAGCAGCGCCGCGCGGAAAAAGACCTGCGCATGGCAGCCACGGTATTCGAGCACTCGACCTCGGCGATCCTGA TCACCGATCCGGCGGGCTACATCGTCCAGGCCAACGAGGCGTTCAGCCGGGTCAGCGGCTACGCGGTGTCCCAGGTGCTCGACCAGTTGCCGAACATGCT CACCGTCGACGAACAGCAGGAAGCCCACCTGCGCTATGTGCTCAAGCAGCTGCACCAGCACAGCACCTGGGAAGGCGAAGTCTGGCTCAAGCGCCGTAAC GGCGAGCACTATCCGGCCTGGGTCGGCATCACCGCGGTGCTCGATGACGAAGGCGATCTGGCCAGCTATGTGTGCTTCTTCACCGACATCAGCGAACGCA AGGCCAGCGAGCAGCGCATTCACCGCCTGGCCTACTACGACGCCCTGACCCACCTGCCCAACCGCACGCTGTTCCAGGATCGCCTGCACACCGCCCTGCA GTCGGCGGAGCGGCAGAAGTCCTGGGTGGTGCTGATGTTCCTCGACCTGGACCGCTTCAAGCCGATCAACGACTCCCTGGGCCACGCCGCGGGCGACCGC ATGCTCAAGGAAATGGCCACCCGCCTGCTCGATTGCGTCGACGATGACGACACCGTGGCGCGCATGGGTGGCGATGAGTTCACCTTGCTCCTGCAACCGC GGACCAGCCGCGAGATAGCCCTGAACCGGGCGATCCACGTCGCCGAGCAGATTCTCGCCAGCCTGGTGAAGCCGTTCGTGCTCGAAGGCCGTGAGTTCTT CGTCACCGCCAGTATCGGCATCGCCCTCAGCCCGCAGGACGGCAACGAGCTGAGCCAACTGATGAAAAACGCCGACACCGCGATGTACCACGCCAAGGAA CGCGGCAAGAACAACTTCCAGTTCTACCAGGCCGACATGAACGCCAGCGCCCTGGAACGCCTGGAGCTGGAAAGCGACCTGCGCCACGCTCTGGAACAGC AGGAATTCATCCTCTACTACCAGCCGCAGTTCAGCGGCGACGGCAAGCGCCTGACCGGCGCCGAGGCCCTGCTGCGCTGGCGCCATCCGCGGCGTGGGCT GGTACCGCCGGGGGACTTCATCCCGGTGCTCGAAGAACTGGGGCTGGTGGTGGATGTCGGCGACTGGGTGATCAGCGAAGCCTGTCGCCAGCTCAAGGCC TGGCACCAGGCCAAGGTCCGGGTGCCGAAGGTCTCGGTGAACATCTCGGCCCGCCAGTTCTCCGATGGCCAGCTGGGCATGCGGATCGCCACCATCCTCA AGGACACCGGCCTGCCGCCGGCCTGCCTGGAGCTGGAACTGACCGAAAGTATCCTGATGCGCGAAGTCAGCGAGGCGATGCAGATCCTCGACGGCCTGAA GAACCTCGGCCTGAGCATCGCGGTCGACGACTTCGGCACCGGCTATTCATCGCTGAACTACCTCAAGCAGTTCCCCATCGATGTCTTGAAGATCGACCGC ACCTTCGTCGACGGCCTGCCGTCCGGCGAGCAGGACGCGCAGATCGCCCGCGCCATCATCGCCATGGCCCACAGCCTGAACCTGGCGGTGATCGCCGAGG GCGTGGAAACCCATGAGCAGTTGGACTTTCTGCGTGAGCACGGCTGTGACGAAGTCCAGGGCTATCTGTTCGGTCGGCCGATGCCGGCCAACAGCTTCGA AGGGCAGTTCAGCAACGACGCGCTGTTCATGTTCGACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAAGCAGCGGCAAGCTTCAAGCGACGAGCGGCAAGATAGAAGCCGTTCGCCTGCAGGCTTCTAGCTTGAGGCTTCTAGCTTGAAGCTTGAAGCTTGAAGC TTGAAACTGATTTGCGTGCGACATGATGTCCTTTCATATGCCATCTAAAACCCGTTGGGTTAGAATGCCCCCCTTTTCTGCCCCGATCCTTGAGGACCGC CATGTTCAGCCGTGATTTGACTATTGCCAAGTACGACGCCGATCTCTTTGCCGCCATGGAGCAAGAAGCCCAGCGCCAGGAAGAGCACATTGAGCTGATC GCTTCGGAAAACTACACCAGCCCTGCGGTGATGGAAGCTCAAGGCTCGGTGCTGACCAACAAATACGCCGAAGGTTACCCAGGCAAGCGTTACTACGGCG GCTGCGAATACGTCGACGTGGTTGAGCAACTGGCCATCGACCGCGCCAAGGAGCTGTTCGGCGCCGACTACGCCAACGTCCAGCCGCACGCTGGCTCGCA
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MSNATPPSSLRATAPASGSPLRGTLKGVLATLVLLLLALLFWQLLDQLQQTRKDQRQHAIDYNADLAEHISLNLALNAQIALNLLPIIEPPQNAEQQQLL LKKLQLSLPDLQSIALLDAKGQLISDSDADGQDAAWLAELTSRSRGQRYYYSNASHGALVQLLLHQPSGALKSYWVLRLAPSFAQSLSPSPDQGFQPTWV IENRLNQKALSRDDGSSTPVTTDDIANSVLVAPLGNSDWQLRGLFDDRAVIEQLLPAFIAKCLLGLAFSLLPVIALLNMRRRQRQLHEGRRRYQDIFEGT GVALCVLDISGLPAFLDKAQLHDSEQLKAWLEHNPQQRQLLLEELRVTEVNQVALRLLNVDSCEQAWKLLIEGSPLHSSAIGNQLLETVINQHKQLELEI RLSDAQGHDQHLWLVLRLPEDPADYRAVILSISDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNKTELHQMGEYFWE ILLHPEDADLYHRLRQEQRHAGYLQLLQCHLRFRHRSGQWRCFDIREQALARDKYDQVTRIIGVAKDITDQIEASESLRDSERRYRMLAESISDVIFSTD SQMALNYVSPSVQSVLGYDAEWIFQNGWQSTIANPQQLTGIYALMERVSKALDKPEQLARLRNQVQTQLFLFDCLRADGRKIPIELRLVLVWDEHGAFEG VLGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSQVLDQLPNMLTVDEQQEAHLRYVLKQLHQHSTWEGEVWLKRRN GEHYPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSWVVLMFLDLDRFKPINDSLGHAAGDR MLKEMATRLLDCVDDDDTVARMGGDEFTLLLQPRTSREIALNRAIHVAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKE RGKNNFQFYQADMNASALERLELESDLRHALEQQEFILYYQPQFSGDGKRLTGAEALLRWRHPRRGLVPPGDFIPVLEELGLVVDVGDWVISEACRQLKA WHQAKVRVPKVSVNISARQFSDGQLGMRIATILKDTGLPPACLELELTESILMREVSEAMQILDGLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDR TFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLREHGCDEVQGYLFGRPMPANSFEGQFSNDALFMFD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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