Pseudomonas chlororaphis YL-1, P637_RS0122020

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 447 578 3.5E-9
Pfam PF13426 PAS domain IPR000014 PAS domain 595 710 2.4E-7
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 435 569 5.23E-13
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 568 709 1.03E-16
SMART SM00091 pas_2 IPR000014 PAS domain 450 520 0.32
SMART SM00091 pas_2 IPR000014 PAS domain 719 785 1.2E-6
CDD cd01949 GGDEF IPR000160 GGDEF domain 845 1007 8.74103E-63
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 719 1268 0.0
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1019 1275 2.5E-106
Pfam PF08447 PAS fold IPR013655 PAS fold-3 474 565 4.1E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 278 443 2.6E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 580 721 4.2E-21
SMART SM00086 pac_2 IPR001610 PAC motif 791 833 2.2E-5
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 579 718 6.5E-12
Gene3D G3DSA:3.30.450.20 PAS domain - - 444 569 3.6E-14
CDD cd00130 PAS IPR000014 PAS domain 592 708 2.48644E-4
Gene3D G3DSA:3.30.450.20 PAS domain - - 722 844 6.7E-29
SMART SM00052 duf2_2 IPR001633 EAL domain 1019 1265 5.7E-127
Pfam PF00563 EAL domain IPR001633 EAL domain 1025 1260 1.2E-76
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 844 1005 3.5E-51
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1020 1274 6.2E-102
SMART SM00091 pas_2 IPR000014 PAS domain 583 649 0.41
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1024 1270 6.54E-93
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 841 1007 7.3E-41
CDD cd01948 EAL IPR001633 EAL domain 1025 1263 5.84446E-116
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 845 1015 7.9E-62
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 849 1010 1.02E-49
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 723 839 6.4E-18
Pfam PF13426 PAS domain IPR000014 PAS domain 731 832 1.5E-15
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 279 436 8.25E-6
SMART SM00086 pac_2 IPR001610 PAC motif 528 571 7.5E-4
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 839 1011 1.3E-45
SMART SM00267 duf1_3 IPR000160 GGDEF domain 833 1009 2.3E-69
CDD cd00130 PAS IPR000014 PAS domain 728 830 2.53841E-11
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 731 841 2.39E-23
SMART SM00086 pac_2 IPR001610 PAC motif 669 711 7.3E-4

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.