Pseudomonas chlororaphis HT66, M217_RS0127800

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis HT66 contig000042, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGGTGCTGGGCGTGCTCTATGAAAGCTACATTCACCCGCTGACCATTCTCTCCACGCTGCCGTCGGCCGGGGTCGGCGCCTTGCTGTCGATCTATGTGC TGGGCGGCGAGTTCAGCCTGATCTCGCTGCTGGGGCTGTTCCTGCTGATCGGCGTGGTGAAGAAAAACGCCATCCTGATGATCGACCTGGCGTTGCAGCT GGAACGCCATCAGGGCCTGAGCCCGCTGGATTCGATCCGCAGCGCCTGCCTGCTGCGCCTGCGGCCGATCCTGATGACCACCCTGGCGGCGATCCTCGGT GCCTTGCCGTTGCTGCTGAGCAGCGCCGAAGGCGCGGAAATGCGCCAGCCCCTGGGCCTGACCATCATTGGCGGCCTGGTCTTCAGCCAGATCCTGACCC TCTACACCACCCCGGTGGTCTACCTCTATCTCGATCGCCTGCGCCATAAGTTCAACCACTGGCGTGGGGTTCGTACCGATGCCGCTCTGGAAACGCCGCT
DNA Sequence for Gene
>M217_RS0127800
ATGACTGACTGTTCGCCACGCAACCTTCCTCAGCGCCTGGCCCTGGCCCGCGGTTCGCGGTTGTTGAGCCTGAGCTTGAGCCTGGCGCTGCTCAGCGCCT GCGCCATCGGCCCGGACTATCAGCGCCCGACTGTCGCCGAGCCCGCGCAATACAAGGAAGCGGCGGGCTGGCGCCAGGCCAGCCCCAGCGATGCCCTGGC CCGTGGCGCCTGGTGGGAGCTGTACGGCGACCAGCAGCTCAACGGCCTGATCGACAAGCTCAACAGCGCCAACCAGACCGTGGCGCAGTCCGAGGCCCAA TACCGCCAGGCCCAGGCCCTGGTGCGCAGCGCCCGTGGTTCGCTGTTCCCCACGGTGGACCTGAGCGCCGGCAAAACCCGCGCCAGCCAGGGCACCGGCA GCAGCAGTTCGGCCCTGAGCAGCTCTTCCAGTGGCATTCGCGACACCTACAACACCCAGCTTGGGGTGAGCTGGGAGGCCGATGTCTGGGGCAAGCTGCG CCGCGGCCTGGAGGCCAACGAAGCCAGCGCCGAAGCCAGCTTCGCCGACCTTGCGGCAATGCGCCTGAGCCAGCAGTCGGAGCTGGTGCAGAACTACCTG CAACTGCGGGTCATGGACCAGCAGAAGCGCCTGCTCGAAGCCACGGTGGCGGCCTACCAGCGCTCGCTGACCATGACCGAGAACCAGTACCGCGCGGGGG TTTCCGGCAAGGACGCGGTGGCCCAGGCGCAAACCCAGCTGAAAACCACCCAGGCCGAGCTGATCGACCTGATCTGGCAGCGCGCCCAGCTGGAAAACGC CATCGCGGTGCTGATCGGCCTGCCGCCGGCCGAGTTCAGCCTGGCCGAGACCCAGGACATCCCGGCCTTGCCCCAGGTGCCCTTGAGCCTGCCGTCGCAG CTGCTGGAACGGCGCCCGGACATCGCCTCGGCCGAGCGTTCGGTGATCGCCGCCAACGCCAATATCGGCGTGGCCAAGGCTGCCTATTACCCGGACCTGA CCCTGAGCCTGGCCGGCGGCTACAGCAGCAGTACCTACGCCGACTGGATCAGCCTGCCGAACCGCTTCTGGTCGGTGGGGCCGAAACTGGCCATGACCCT GTTCGACGGCGGCCAGCGTTCGGCGGAAGTCGACCGCACCGAGGCGGCCTACGACCAGACCGTGGCCAAGTACCGCCAGACTGTGCTCGACGGCTTCCGC GAGGTGGAGAACTACCTGGTGCAGCTCAAGGTCCTGGAAGACGAGGCCGCGGTGCGCCAGCAGGCCCTGGATGCGGCGCGCGAGTCCCTGCGCCTGACCG AGAACCAGTACAAGGCCGGGGTGATTGCCTACCTGGACGTGGTGGTGGTGCAGGCCACCGCATTGAGCAACGAACGCAGCGTGCTGACCCTGCTGCAAAG CCGGCTGGTCACCAGCGTGCAACTGATCGCCGCCCTCGGCGGCGGCTGGGACGGCCAGCTGCAGGCCAGCAAGGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGGGCTGAATCCGTGATCCGCCCGGGCAATCGCGTCGCCGGGTTTACGACTGCTGCCTGAGCCTTGTAGCCGCTGCCGAGCCCGCGAGGCTGCGAACAGT TTGGGCGGCACTCCGACGCAGCGACCCTAAGCCCTGGCCCCGGGGCCTGCCTGGATAAATGCGCGGCCTGGTTTCACGACCGCTACGCGGTTGCGCGCAG GCTGCGCCAGCGGCTACATCGATAGCGGCGTGCCTGGCGTTGTCAGGAGCCGAGTCGCTGTAACCGATTTGTTTTATCAGCCGGCTACTTTCATCCGACT GATGGCTTTTTGCTTACTTTGTGAGTGTGTTTCTGTACGCAATCAGTACAATTACGCCTTTTACCGCCGGGCATGGAAGCTTCCGGCTCACGCCACGAGA CGTTCATGCTCACCGGTACCTACTCTCCCGCACTGGTTCTGATTTCCCTGTTTGTGGCGATTCTCGCCTCTTACACCGCGCTCGACCTGACTGGTCGCAT
Amino Acid Sequence
>RND transporter
MTDCSPRNLPQRLALARGSRLLSLSLSLALLSACAIGPDYQRPTVAEPAQYKEAAGWRQASPSDALARGAWWELYGDQQLNGLIDKLNSANQTVAQSEAQ YRQAQALVRSARGSLFPTVDLSAGKTRASQGTGSSSSALSSSSSGIRDTYNTQLGVSWEADVWGKLRRGLEANEASAEASFADLAAMRLSQQSELVQNYL QLRVMDQQKRLLEATVAAYQRSLTMTENQYRAGVSGKDAVAQAQTQLKTTQAELIDLIWQRAQLENAIAVLIGLPPAEFSLAETQDIPALPQVPLSLPSQ LLERRPDIASAERSVIAANANIGVAKAAYYPDLTLSLAGGYSSSTYADWISLPNRFWSVGPKLAMTLFDGGQRSAEVDRTEAAYDQTVAKYRQTVLDGFR EVENYLVQLKVLEDEAAVRQQALDAARESLRLTENQYKAGVIAYLDVVVVQATALSNERSVLTLLQSRLVTSVQLIAALGGGWDGQLQASKE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site