Pseudomonas chlororaphis HT66, M217_RS0127800
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0015562 | efflux transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF02321 | Outer membrane efflux protein | IPR003423 | Outer membrane efflux protein | 297 | 480 | 3.8E-32 |
| Coils | Coil | Coil | - | - | 247 | 267 | - |
| SUPERFAMILY | SSF56954 | Outer membrane efflux proteins (OEP) | - | - | 19 | 485 | 2.88E-110 |
| Pfam | PF02321 | Outer membrane efflux protein | IPR003423 | Outer membrane efflux protein | 81 | 273 | 8.7E-24 |
| Coils | Coil | Coil | - | - | 409 | 429 | - |
| Gene3D | G3DSA:2.20.200.10 | Outer membrane efflux proteins (OEP) | - | - | 117 | 371 | 4.4E-125 |
| Coils | Coil | Coil | - | - | 80 | 107 | - |
| NCBIfam | TIGR01845 | JCVI: efflux transporter outer membrane subunit | IPR010131 | RND efflux system, outer membrane lipoprotein, NodT | 27 | 482 | 1.3E-129 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 125 | 146 | - |
| Gene3D | G3DSA:1.20.1600.10 | Outer membrane efflux proteins (OEP) | - | - | 71 | 482 | 4.4E-125 |
| PANTHER | PTHR30203 | OUTER MEMBRANE CATION EFFLUX PROTEIN | - | - | 15 | 490 | 2.0E-98 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.