Pseudomonas chlororaphis HT66, M217_RS0116175
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 543 | 577 | - |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 579 | 735 | 4.55788E-66 |
| Coils | Coil | Coil | - | - | 462 | 482 | - |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 564 | 737 | 5.4E-58 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 583 | 736 | 6.12E-50 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 476 | 496 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 276 | 325 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 276 | 334 | - |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 572 | 737 | 1.6E-52 |
| Coils | Coil | Coil | - | - | 5 | 25 | - |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 434 | 736 | 5.3E-71 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 578 | 734 | 6.5E-46 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 576 | 736 | 6.9E-50 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 567 | 738 | 8.0E-57 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.