Pseudomonas sp. URHB0015, N526_RS0120610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCAACGGCGACACCCCGCTGCTGACCTGCGACGTCTGGGAACACGCCTACTACATCGACTACCGCAACGTGCGTCCAAAGTATGTGGAAGCGTTCTGG AACCTGGTCAACTGGAAGTTCGTGGCAGAGCAGTTCGAAGGCAAAACCTTCACCGCGTAAGCCTGGCTTGCAGTGAAAGAACCCGGCATTGCCGGGTTTT TTTATGCCTGTGGCGGTCCCGCCAATCCCTGTGTCGAAACAACCTGAAATCAGCTCTGCGCTTGCTCCGGCGCCACAGCCGTCTACCATCAACTTCACAC AAATATTCTCCCCTCCCCCTCAAGTTGCAGGAGGTGCCGACCGACACACTACTAATAGGCTTCAATGACCGGTCAGCGCGACAATACGACCAGGCCCGGG CTAAAACCTGCATGGCTTGATTGCCCCTTTGACTGCCATCACGGGATTGCCAATACTCATGGCAACTTGACGTTACCCGCATGGAACAAGGAATTACCCT
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| DNA Sequence for Gene |
>N526_RS0120610
TTGAAGCTGGAACTCAAAAACAGCTTGTCGGTGAAGTTGCTACGGGTAGTGCTTCTGTCGGCATTGATCGTCGGTGTGGTCCTGAGCTGCGCACAGATCG TTTTCGATGCCTATAAAACCCGCCAGGCGGTAGCCAATGATGCCGAGCGCATCCTCGACATGTTCCGCGACCCCTCGACCCAGGCCGTCTACAGCCTCGA TCGGGAAATGGGCATGCAAGTCATCGAGGGCCTGTTCCAGGACGACGCTGTACGAATGGCCTCCATCGGCCACCCCAATGAAACCATGCTCGCGGAAAAA TCCCGCGAACTGCAGCATTCCGACAGCCGCTGGCTGACTGACCTGATACTGGGCAAGGAGCGCACCTTCACCACCCAACTGGTGGGTCGCGGGCCTTACA GCGAATACTACGGCGACCTGAGTATCACCCTCGACACCGCCACCTACGGTCAGGGATTCATCGTCAGCTCGGTCATCATCTTCATTTCCGGCGTGCTGCG GGCAATGGCCATGGGCTTGGTGCTGTACCTGGTCTATCACTGGCTGCTGACCAAACCCCTGTCGCGGATCATCGAGCACCTGACCAACATCAACCCGGAC CGTCCCAGCGAACACAAGATTCCTCAGCTCAAGGGTCACGAGAAAAACGAACTGGGGCTGTGGATCAATACCGCCAACCAGTTGCTGGAGTCCATCGAGC GCAACACCCATTTGCGCCACGAGGCGGAAAACAGCCTGCTGCGCATGGCCCAGTACGACTTTCTCACCGGCCTTCCCAATCGCCAGCAATTGCAGCAGCA ACTGGACAAGATCCTGGTGGATGCCGGGCGCCTGCAACGCCGGGTGGCGATCATTTGCGTCGGTCTGGATGACTTCAAGGGCATCAACGAACAATTCAAC TACCAGACCGGCGACCAACTGTTGCTGGCCCTGGCCGATCGCCTGCGTGCCCACAGCGGCCGCCTCGGCGCCCTGGCACGCCTGGGCGGCGATCAGTTTC TGCTGGTCCAGGCCGATATCGAGCAACCCTACGAAGCTGCCGAACTGGCACAGGGTATTCTCGACGACCTGGAAACCCCCTTCGCCCTTGACCACCAGGA AATTCGCCTGCGCGCGACCATTGGCATCACCCTGTTCCCGGAGGATGGCGACAGCACCGAGAAGCTGTTGCAGAAAGCCGAACAGACCATGACCCTGGCG AAGATCCGCTCACGCAACCGCTATCAGTTCTATATCGCCAGCGTCGACAGTGAAATGCGCCGCCGTCGTGAGCTGGAAAAAGACCTGCGCGATGCGCTCA GACGCGAGCAGCTGTATCTGGTCTATCAACCACAGATCAGCTATCGCGACCACCGTGTGGTCGGCGTCGAGGCCCTGATCCGCTGGCAGCACCCCGAACA CGGCATGGTGCCACCCGACCTGTTCATTCCGCTGGCGGAGCAGAACGGCACCATCATTGCCATTGGCGAGTGGGTCCTGGACCAGGCATGCCGACAGTTG CGTGACTGGCACGACCAGGGTTTCAGCGACCTGCGCATGGCCGTCAACCTGTCCACGGTGCAACTGCACCACGCCGAACTGCCGCGAGTGGTCAACAACC TGATGCAGATGTACCGCCTGCCGCCGCGCAGCCTGGAGCTGGAGGTCACTGAAACCGGCCTGATGGAGGATATCAGCACCGCCGCCCAGCACCTGCTCAG CCTGCGCCGCTCCGGCGCCCTGATCGCCATCGACGACTTCGGCACCGGCTACTCGTCCCTCAGTTACCTGAAAAGCCTGCCACTGGACAAGATCAAGATC GACAAGAGCTTCGTCCAGGACCTGCTGGATGACGATGACGACGCCACCATCGTTCGAGCCATCATCCAGTTGGGCAAGAGCCTGGGCATGCAAGTGATTG CCGAGGGCGTGGAAACCGCCGAGCAAGAGGCCTACATCATTGCCGAAGGCTGTCATGAAGGTCAGGGCTATCACTACAGCAAGCCGCTGCCAGCACGAGA ATTGAGCGTCTACCTGAAACAGGCGCAACGCAGCAACGCCGCCATCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGACGAGCTCGGTCGCCGGTTCATCCTCACGCTGAATAGGAAATATTTACAGGTACAACCCTTTACACATAATGCGAAAGATTTGCATTATGTCGCAG TTTTGCGCGCCCTCGCGCCTGTCCATCATCTCCCGAAGCAGGATGTTCGCCATGATTCGTATGCCTCTGGCTACCGCCAGTTTGCTGGCCATCGCTATTT CCCTCGCCGGTTGCGGCGAAGGCAAAGACAAGGCTGCTGCTCCACAAGCGCCGACTCCGGCCGCCACTACCACTGCCCCGGCGGCCCCGGCTGCGGCTGG TAAAGTCGACGAAGCCGCTGGCAAAGCCGTTGTCGCGCATTACGCCGACATGGTCTTCGCCGTCTACAGCGATGCCGAATCCACCGCGAAAACCCTGCAA ACCGCAATCGACGCTTTCCTCGCCAAGCCGAACGACGAAACCCTGAAAGCCGCCAAGGCCGCCTGGGTTGCCGCACGCGTTCCGTACCTGCAGAGCGAAG
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVANDAERILDMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRMASIGHPNETMLAEK SRELQHSDSRWLTDLILGKERTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVSSVIIFISGVLRAMAMGLVLYLVYHWLLTKPLSRIIEHLTNINPD RPSEHKIPQLKGHEKNELGLWINTANQLLESIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGRLQRRVAIICVGLDDFKGINEQFN YQTGDQLLLALADRLRAHSGRLGALARLGGDQFLLVQADIEQPYEAAELAQGILDDLETPFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KIRSRNRYQFYIASVDSEMRRRRELEKDLRDALRREQLYLVYQPQISYRDHRVVGVEALIRWQHPEHGMVPPDLFIPLAEQNGTIIAIGEWVLDQACRQL RDWHDQGFSDLRMAVNLSTVQLHHAELPRVVNNLMQMYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIAEGCHEGQGYHYSKPLPARELSVYLKQAQRSNAAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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