Pseudomonas sp. URHB0015, N526_RS0120610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 421 | 682 | 6.4E-103 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 250 | 407 | 8.6E-35 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 251 | 409 | 9.08867E-36 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 249 | 417 | 1.7E-43 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 426 | 675 | 4.97E-93 |
| Coils | Coil | Coil | - | - | 415 | 435 | - |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 421 | 667 | 7.6E-121 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 248 | 409 | 1.7E-27 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 239 | 411 | 5.8E-39 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 427 | 662 | 2.1E-76 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 422 | 677 | 7.5E-104 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 255 | 411 | 7.61E-37 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 428 | 667 | 1.51703E-113 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 204 | 677 | 0.0 |
| Coils | Coil | Coil | - | - | 261 | 281 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.