Pseudomonas umsongensis UNC430CL58Col, N519_RS0105365
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAACGCTGGCACCGAGCTGATTGCCCAGGTCTGCAAAGACCCGCAAAACGTGCCGGAGCCCGAAGAAATCGCCAAGGCCCTGCGCCAACCGCTGCTGGA GATTTTCCCGCCGGCATTGCTGGGCCGGCTGGTGACCATTCCGTATTACCCGCTCAGCGACGAGATGCTCAAGGCCATCACCCGCCTGCAACTCAACCGC ATCAAGAAGCGCGTGGAAAACACCCACAAGGTGGCTTTCGATTACGACGACGCGGTGATCGACCTGATCGTCTCCCGTTGCACCGAAACCGAAAGCGGCG GGCGGATGATCGACACCATCCTGACCAACAGCCTGCTACCGGACATGAGCCGCGAATTCCTCACCCGCATGCTCGAAGGCAAAGCGCTGGCAGGCGTGCG GATCAGCGCCCGGGATAACGAATTGCACTACGACTTCAGCGACGCCGCCTAAGCGGCCCTCCTCCGTAGGAAGGAACCGAGCAGTGACAAGGGATAACTG
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| DNA Sequence for Gene |
>N519_RS0105365
ATGCTATTCAAGCAACTCTCACGCCTGGCAAAGATCACCAGCCCCCTGGGGCCGGATGTGCTGTTGCTCAAGGACATGGGCGGAGACGAAGAATTGGGGC GGCTGTTCAGCTATGAGCTGCAGTTGCACTCGCTGGACAACGCCATCGACCTCAACCAGTTGCTCGGCAAACCCATGTGCCTGAGCCTGCAACTGGACGG CGGTGGCGAGCGTCATTTCCATGGCATCGTTGCCCGTTGCAGCCAGAACGTCGACCAGGGCCAGTTCGCCAGTTACCAGGCCACGCTGCGGCCCTGGCTA TGGCTGCTGACCCGCACCTCCGATTGCCGGATTTTCCAGAACCTGACCATCCCGCAGATCATCAAGCAGGTGTTTCGCGACCTGGGTTTTTCCGATTTCG AAGATGCCCTGAGCCGGCCCTATCGCGAGTGGGAATACTGCGTGCAGTATCGCGAAACCAGCTTCGACTTCGTCAGCCGCCTGATGGAACAGGAAGGAAT CTACTACTTCTTCCGCCATGAACAGGGTCGTCATGTACTGGTGCTGGCCGACGCCTACGGCGCCCATGCCAACGTGCCCGGCTATGCCTCGGTGCCCTAC TACCCCAAGAATGAACAGCAGCGCGAACGCGATCACATCTACGATTGGCACCTGGCCCAGCAAGTCCAGCCGGGTTCGCTGGAACTCAACGACTATGATT TCCAGCGCCCCAGCGCGCGTATCGACGTGCGCTCGGCCATGCCTCGTCCGCACACCGCCGGCGATTATCCGCTGTACGACTACCCCGGCACTTATGTGCA AAGCGCAGACGGCGAACACTACGCCCGCACCCGCATCGAAGCGTTGCAGACCCTGCACGAACAGGTCGAGCTGGCCGGTAACGCCCGAGGCCTGGGCTCG GGTCATTTGTTCAGCCTCACCGGCTTCAGCCGCCAGGACCAGAACCGTGAATACCTTATCGTCGGCACCCGCTATTACATTTCCCAGGAAAGCGGGGAAA CCGGTGGTGGCGCGCCTTCGGCACAGTTCGAAAGCAGCCTGACCTGCATCGACGCCCAACAAAGCTACCGCCCGCTGCCCAACACCCACCGCCCCATCGT CAAAGGCCCGCAGACCGCGTTGGTGGTGGGCCCCAAAGGCGAGGAAATCTGGACCGATCAGTTTGGCCGGGTGAAGGTGCATTTCTATTGGGACCGGCAT GATCAGTCCAACGAAAACAGTTCGTGCTGGATTCGCGTGTCGCAATCCTGGGCCGGAAAAAACTGGGGCTCGATGCAGATCCCACGAATCGGCCAGGAAG TCATCGTCAGCTTCCTCGAAGGCGACCCGGATCGGCCGATCATCACCGGCCGCGTCTACAACGCCGAACAGACCGTGCCCTATGACTTGCCGGAAAACGC TACCCAGAGCGGCATGAAAAGCCGTTCGAGCAAGGGCGGCTCGCCGGCCAATTTCAACGAAATCCGCATGGAAGACAAAAAAGGCGCCGAGCAGTTGTAC ATCCATGCCGAGCGCAATCAGGACATCGTGGTCGAGGTGGATGAAAGCCACTCGGTGGGCCACGACCGCAACAAAAGCATCGGGCATAACGAAACGGTGA CCATCGGCAACAATCGGCTGCGCATCGTCAAGCAGGAAGACATTCTGTCGGTGGGCCAGCGCAAGACCGACAGCATCAGCCAGAGCTACGTCATCGAAGT GGGCGAAAACCTGCGGCTGGTATGCGGCGAAAGCATCCTGGAGCTCAATGCCAGCGGCCAGATCAACCTGACCGGCGTGCAAATCAGCTTCTATGCCAGC GGTGACGCCGAGATCAACACCGGCGGCGTGCTGCACCTGAACAACGGCGGCGGCCCTGGCGCCACGCCTGACGGCCAGGGCGTCAAGGCCAGCATCGACG CCAATATCAATGCCGCGTTTCCCAAGCCCAAGGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACGAGATCTGTGTTCCATGGCTTACCGAATCAATGAATTCCAGTTCCAGCTGCCGGCAAGCGAGCTGCAAGACGCGACGATCAACATCCTCAAGTTCC CCGAACTGGGCACCTCGCTGATAGTCAGCCGCAGCTTGCTGGCCGAGGGCGAAACACTGCAAAGCAACTTCGACGACCAGCTCAAGCGCCTGGAAAAACA AGTGCAGGACTTGCGTTTTCAGCCGGGCGTCGCCGTGCGCCTGGGCGCCAGCCAGGAGGTCGAAGGCATCGAGTTGCGCAGCCAGTTCAACAAGGGCAAC GACAAAGTCTTCCAGTATCAGTTGGCGCTGGTATTGCCCGGCACCCGCAAAATGCTCGCCCTGAGCTACGTGAAGGCGGAAAAACTCGGCGATGCCGAAG CCGCGCATTGGGCAACCATCAAGAGTTCGCTGTTGTTCGACGTTCCGGCCTGATGAGCACCCTGCATGTCTGACGCACTCTGGGCCGCCCGCCTGGGCGA
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MLFKQLSRLAKITSPLGPDVLLLKDMGGDEELGRLFSYELQLHSLDNAIDLNQLLGKPMCLSLQLDGGGERHFHGIVARCSQNVDQGQFASYQATLRPWL WLLTRTSDCRIFQNLTIPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQYRETSFDFVSRLMEQEGIYYFFRHEQGRHVLVLADAYGAHANVPGYASVPY YPKNEQQRERDHIYDWHLAQQVQPGSLELNDYDFQRPSARIDVRSAMPRPHTAGDYPLYDYPGTYVQSADGEHYARTRIEALQTLHEQVELAGNARGLGS GHLFSLTGFSRQDQNREYLIVGTRYYISQESGETGGGAPSAQFESSLTCIDAQQSYRPLPNTHRPIVKGPQTALVVGPKGEEIWTDQFGRVKVHFYWDRH DQSNENSSCWIRVSQSWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPENATQSGMKSRSSKGGSPANFNEIRMEDKKGAEQLY IHAERNQDIVVEVDESHSVGHDRNKSIGHNETVTIGNNRLRIVKQEDILSVGQRKTDSISQSYVIEVGENLRLVCGESILELNASGQINLTGVQISFYAS GDAEINTGGVLHLNNGGGPGATPDGQGVKASIDANINAAFPKPKG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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