Pseudomonas resinovorans CA10 (NBRC 106553), PCA10_RS04475

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 830 940 5.83E-22
Pfam PF00563 EAL domain IPR001633 EAL domain 1124 1359 3.2E-76
SMART SM00052 duf2_2 IPR001633 EAL domain 1118 1364 3.3E-126
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 667 808 9.34E-15
SMART SM00086 pac_2 IPR001610 PAC motif 627 670 3.8E-10
CDD cd01949 GGDEF IPR000160 GGDEF domain 944 1106 5.8341E-61
Gene3D G3DSA:3.30.450.20 PAS domain - - 260 376 3.7E-8
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 940 1106 9.7E-42
CDD cd00130 PAS IPR000014 PAS domain 827 929 1.95095E-11
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 944 1114 1.8E-61
Gene3D G3DSA:3.30.450.20 PAS domain - - 680 818 4.7E-18
SMART SM00267 duf1_3 IPR000160 GGDEF domain 932 1108 1.2E-68
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 678 815 8.6E-9
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1123 1369 2.75E-93
SMART SM00086 pac_2 IPR001610 PAC motif 768 810 0.0065
Gene3D G3DSA:3.30.450.20 PAS domain - - 819 943 3.3E-29
CDD cd01948 EAL IPR001633 EAL domain 1124 1362 5.36074E-115
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 821 938 8.5E-18
Pfam PF08447 PAS fold IPR013655 PAS fold-3 576 664 2.7E-15
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 938 1109 2.4E-44
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 445 544 6.7E-5
CDD cd00130 PAS IPR000014 PAS domain 558 667 6.67225E-8
Pfam PF13426 PAS domain IPR000014 PAS domain 830 931 1.2E-12
SMART SM00091 pas_2 IPR000014 PAS domain 818 884 1.7E-6
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 259 376 9.18E-8
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1119 1372 7.4E-107
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 943 1104 3.7E-51
Pfam PF13426 PAS domain IPR000014 PAS domain 693 809 6.6E-5
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 948 1109 1.49E-49
SMART SM00091 pas_2 IPR000014 PAS domain 549 618 6.8E-4
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 534 668 1.61E-18
SMART SM00091 pas_2 IPR000014 PAS domain 682 746 0.59
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 546 675 2.6E-10
SMART SM00086 pac_2 IPR001610 PAC motif 496 537 520.0
SMART SM00091 pas_2 IPR000014 PAS domain 270 337 0.27
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 818 1370 0.0
SMART SM00086 pac_2 IPR001610 PAC motif 890 932 6.5E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 559 673 1.1E-19
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1119 1373 3.8E-101

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.