Pseudomonas parafulva YAB-1, XB13_RS12015 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCATCGCGTCTACTTCGGTCAGGGCCTGATCGGCAGGGCCGCCATATCCAGGCTCATGAGGATCTCGGGCGCCGGTCTCATCCAGCAGCGTGTCCGGGC TCAGGTCGTCATCGGTGACGCCGTCCTCATGCAGGCTGTCGGTCAGTGCCTCGCCGCCGGTCAAGCCGCTCTGGCGCACCCGTTCTTCCGGAAACTCCTG CTCCACTTCACTTTCTGGCCGCTCATCACCTACCCGTCCCTGACGGTCATCAAGGCGATCACTGAAGTTCAGCTCATGCACGCTGCCCATTCGATCCTCG ATGTCATCGATCTCGGTCGGGGTATAGGCTTTGGGTTCATCGGGTCTGGACATTACGCCTCTCCATCAGTTGGCTTACCCAAAGTCGACTGCTCTGCACC CAGGAAGATTCAGAGTTTTACGCGGCTACCGGCGGTTTTTTGAACTCCAGCGCTGTTCGCCACCTCCCAAGATCAAGACAGCGCAGGTTCCGGAGTTCCC
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| DNA Sequence for Gene |
>XB13_RS12015
|ligD
ATGGCCAAGCCCCTCGAGGAATACGCGCGCAAGCGCGATTTCAACGCCACGCCTGAGCCGAGCGGCAAATCCGGCCGCACCAAAGCGGCCCACGCATTAC AGTTCTGCATTCAGAAGCATGACGCCAGCCATCTTCACTATGATTTCCGGCTGGAACTCGACGGCACGCTTAAAAGTTGGGCGATTCCAAAAGGCCCTTC CTTGGATCCGAAAGTCAAACGCCTGGCCGTGCATGTCGAAGACCATCCGCTCGATTACGCCACGTTCGAAGGCCATATTCCGCAAGGTCACTACGGTGGC GGCGATGTCATCGTCTGGGACCGTGGCGTCTGGGAGCCGGACGGTGATCCGCGTGAGGGGTACGAGAAAGGAAAGCTACGCTTTCGTCTGCAAGGCGAGA AGCTCGCTGGCATGTGGAACCTGTTCCGAACACGGCTGGCAGGCAAGAAAGAGCAGTGGATGCTGGTCAAGTCAAACGACAGCCAGGCCCGCAGTGAGGC GCAGTACAGTATCGTCGAGGAACAGCCCGACAGCGTGCTGAGCGACCGGACATTGACCCCCAAGCCTTCTGCGAAGACGGCCAAACAGGCTAAAAGTAAG CCTGCCCCGGCCAAGCAGACCGCCAAGTCCAAGTCCAAGCCCGGTAAACTACCAGACCACCTACAGCCGCAGTTAGCCACATTGGTCGATTCACCGCCTT CCGGGGAGTGGCGGTATGAGGTGAAGTACGACGGATATCGCATCCTTGCGCGCATTGAGGGCGATGATGTACGGCTCTATACCCGCAATGGTCATGACTG GAGCGCCAAAATGCCCGGCCAGGTCGCTGCGCTACGCGCATTAGGCGTGGACTCTGCGTGGCTCGATGGCGAGATGGTCGTCAATGACGATCAAGGGGTT GCAGATTTTCAGGCCCTGCAGAATGCATTCGATACCGCTCATGATGAACAAATAACCTATTACGTCTTCGACCTGCTGTTCCTGGGCGGCCAGGATCTAC GCGCCCTTCCCTTGCAGCAGCGACGCGACGCGTTGAAGCGTTTGCTCGAGCACAACACTGCGGACAACCTCAACTACTCCGCAGACTTCGACGAGCCGGT CGAAGCGTTGCTTGAAAGCGCCTGTACGCTGGGCCTTGAAGGCCTGATAGGTAAGCGCGCCGACAGCAGCTACACAGGCAAGCGCAGCGCCGACTGGATC AAACTCAAGTGCAAGCGGCGGCAAGAGTTCGTGGTAGTGGGCTATACCGACCCCAAGGGGAGCCGCAATGGGTTCGGCGCCTTGCTGTTGGCTCTGCACG AGGGCGACGGGGGCACGCTGCGTTACGCCGGCAAGGTCGGCACCGGCTTCAGTACCACCACTCTGGATACGCTGCACGCACGACTCGAACCCCTGCAGAC CGCCAGCCCCCCTGTGGCCAACCCCCCCACTGGAGCCGAGGCCCGCGGTGTACATTGGCTCAAGCCCACCTTGCTGGCCGAGATCGCTTTTGCCCAGATG ACGCGTGACGGTGTAGTACGCCACGCGGTATTTCACGGCCTGCGCGACGACAAGCCGGCCACTGCTATCGACCTGGAGCGCGCCATGCCGAGCAAGACCG TCCATAAGCGCAAGGCGGCCAAGGACACCGAGACGCTGGGCGACCTGCGCCTGACCCACCCTGATCGCGTGATCGATCCCACCTCAGGCATGACCAAGCG CGACGTCGTCGAATACTACGTCCAGGTCAGCCAATGGATCTTGCCGCACCTCAAGCACCGGCCGGTTGCGCTCGTACGCGCGCCAGACGGCCTCGCCGGG GAACTGTTTTTCCAGAAGAACGCTGGTCAGCTGCACATTCCAAACGTGCGTACATACGACAAAGAGCAGGCCGGCCAAGCCGCCATGGTGATCAACCGCC CCGACACCTTGCTGGGCGCTGTGCAGATGAACATGCTCGAACTGCACACCTGGAACGCCACGGACACACACTTCGACCGGCCAGATCGTTTCGTGCTCGA CCTGGATCCTGACCCGGCCCTGCCCTGGAAAGCGATGCTGGAGGCCACGCAGCTGACCTTGACCCTGCTGGACGAACTGGGTCTGAAGGTGTTCATCAAG ACCAGCGGGGGCAAAGGTATCCACCTTGTTGTCCCGCTGACGAGAAAAGCGAGCTGGGACGACGTCAAGGATTTCAGTCACGCCATCGTCACCTACCTGG CAAAACTGTTCCCTGATCGGCTCACCGCGGTGTCCGGCCCCAAGAACCGTGTGGGCCGTATCTTCATCGACTACCTGCGCAATGGCAAAGGCGCCACCAC GGTGTGTGCCTATTCGCTGCGTGCTCGCGAGGGCTTGCCGGTTTCAGTGCCCGTCTGGCGTGAAGAGCTGGCGCAGCTCAAGGGGGCCAACCAGTGGACC ATCGCCACCGTTGGCGAGCGACTGGCCGATGCCCAGGACCCTTGGGCCGACATGAGCAAGACCCGTCAATCCATCACGGCGCGGATGCGCAAACAACTTG GCCTCACGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGCCGACGTCTACCGCTACAGGGAGTTTCGCGCATGAGCATGCCTCAGGACCACGACCTCACCCCGTTGGACCGCTTGTTGCGCACTTACGAGGAGCGG CTGCAGCCCCTCAATGTCGATACCCAGTCACTCGAATTGATGAAAACCTTGCGGTCCCAGTGCCTGGACGTCCTACCGCGCCCGGGTCACGGCAGGACGC TGGAGCGCTGGCAGACGTTGTCGCGCGTGGCCGGCTGTGACCTGGCTTTGGCCAAGCTCTATGAGGGCCACACTGACGCTTTGGCGATTCTGGCCGAATG TGGCGCTGGCCATCTTGTAGGCGATGGGATCTGGGGTGTGTGGGCCGCAGAGCCGCCGGATGCTCGCGCCGTCGTTGCATCCAGAGACGGAGATTGCGTT CGCCTTGCCGGGAAGAAGGCGTGGTGTTCGGGCGCCTTGCAAATCGACCAGGCCTTGATCACCGCCTGGGACGAGTCGGGTCAACCGCAGCTGGTTGCCA
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MAKPLEEYARKRDFNATPEPSGKSGRTKAAHALQFCIQKHDASHLHYDFRLELDGTLKSWAIPKGPSLDPKVKRLAVHVEDHPLDYATFEGHIPQGHYGG GDVIVWDRGVWEPDGDPREGYEKGKLRFRLQGEKLAGMWNLFRTRLAGKKEQWMLVKSNDSQARSEAQYSIVEEQPDSVLSDRTLTPKPSAKTAKQAKSK PAPAKQTAKSKSKPGKLPDHLQPQLATLVDSPPSGEWRYEVKYDGYRILARIEGDDVRLYTRNGHDWSAKMPGQVAALRALGVDSAWLDGEMVVNDDQGV ADFQALQNAFDTAHDEQITYYVFDLLFLGGQDLRALPLQQRRDALKRLLEHNTADNLNYSADFDEPVEALLESACTLGLEGLIGKRADSSYTGKRSADWI KLKCKRRQEFVVVGYTDPKGSRNGFGALLLALHEGDGGTLRYAGKVGTGFSTTTLDTLHARLEPLQTASPPVANPPTGAEARGVHWLKPTLLAEIAFAQM TRDGVVRHAVFHGLRDDKPATAIDLERAMPSKTVHKRKAAKDTETLGDLRLTHPDRVIDPTSGMTKRDVVEYYVQVSQWILPHLKHRPVALVRAPDGLAG ELFFQKNAGQLHIPNVRTYDKEQAGQAAMVINRPDTLLGAVQMNMLELHTWNATDTHFDRPDRFVLDLDPDPALPWKAMLEATQLTLTLLDELGLKVFIK TSGGKGIHLVVPLTRKASWDDVKDFSHAIVTYLAKLFPDRLTAVSGPKNRVGRIFIDYLRNGKGATTVCAYSLRAREGLPVSVPVWREELAQLKGANQWT IATVGERLADAQDPWADMSKTRQSITARMRKQLGLT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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