Pseudomonas parafulva YAB-1, XB13_RS12015 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR02776 JCVI: DNA ligase D IPR014143 DNA ligase D 232 819 0.0
PANTHER PTHR42705 BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD - - 214 832 1.8E-107
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 422 518 2.7E-24
Pfam PF13298 DNA polymerase Ligase (LigD) IPR014144 DNA ligase D, 3'-phosphoesterase domain 38 141 1.4E-39
Gene3D G3DSA:3.90.920.10 DNA primase, PRIM domain - - 556 836 5.1E-99
CDD cd07906 Adenylation_DNA_ligase_LigD_LigC - - 221 404 7.68918E-86
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 405 526 1.0E-37
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 214 404 6.24E-46
NCBIfam TIGR02778 JCVI: non-homologous end-joining DNA ligase, polymerase domain IPR014145 DNA ligase D, polymerase domain 550 791 2.4E-89
MobiDBLite mobidb-lite consensus disorder prediction - - 164 229 -
Gene3D G3DSA:3.30.1490.70 - - - 234 401 8.0E-47
CDD cd04862 PaeLigD_Pol_like IPR033651 LigD polymerase domain, PaeLigD-type 566 790 2.49858E-115
CDD cd07971 OBF_DNA_ligase_LigD - - 406 523 1.16816E-53
MobiDBLite mobidb-lite consensus disorder prediction - - 1 27 -
NCBIfam TIGR02777 JCVI: DNA ligase D, 3'-phosphoesterase domain IPR014144 DNA ligase D, 3'-phosphoesterase domain 5 160 9.3E-74
NCBIfam TIGR02779 JCVI: non-homologous end-joining DNA ligase, ligase domain IPR014146 DNA ligase D, ligase domain 223 524 5.3E-111
MobiDBLite mobidb-lite consensus disorder prediction - - 1 17 -
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 245 360 8.0E-47
MobiDBLite mobidb-lite consensus disorder prediction - - 164 193 -
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 406 524 9.0E-30
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 227 403 5.1E-30

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.