Pseudomonas parafulva YAB-1, XB13_RS21400

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01584
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 1359 1492 1.24E-22
MobiDBLite mobidb-lite consensus disorder prediction - - 1013 1034 -
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1320 1338 1.2E-11
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1175 1359 3.8E-62
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 438 569 1.7E-23
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1264 1278 1.2E-11
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1526 1636 1.6E-26
CDD cd16916 HATPase_CheA-like - - 1182 1357 3.44027E-78
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1219 1360 1.5E-22
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 439 560 5.76E-22
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 715 840 1.7E-10
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 576 659 1.3E-9
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1525 1642 2.99E-36
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 574 690 1.03E-17
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 887 1004 9.29E-27
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 570 697 3.0E-15
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 574 668 0.012
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1176 1357 4.82E-36
Gene3D G3DSA:3.40.50.2300 - - - 1526 1645 1.8E-39
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 24 136 7.59E-16
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 574 651 8.86695E-8
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 713 835 1.65E-14
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 886 983 6.9E-5
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1344 1357 1.2E-11
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 17 113 1.3E-6
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 887 984 3.81171E-11
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1524 1637 2.1E-35
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 22 139 6.5E-9
Coils Coil Coil - - 1068 1095 -
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1223 1359 1.4E-14
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 1013 1634 0.0
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1526 1637 8.3662E-31
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 440 531 1.9E-10
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 296 407 3.14E-7
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1037 1174 1.2E-8
SMART SM00260 chew_2 IPR002545 CheW-like domain 1352 1496 9.4E-22
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 888 980 9.3E-15
Coils Coil Coil - - 721 741 -
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 1365 1496 1.0E-21
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1174 1359 3.4E-53
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 438 539 0.034
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 1435 1494 3.1E-18
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 886 1015 3.4E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.