Pseudomonas viridiflava LMCA8, RT94_RS04060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCGGTTTTCTGGCGTTGGTCTGGTCCGATCAGGCGACCGACGCGTTACAAAGCCAGACACTGCGCTTAGACTTGAGTCGGGTTTGTTTTCCTGGGGCA AGTCCACCAATTCGGGAGAAAGTTTTCATGAAGCTAGTCACTGCCATCATCAAGCCGTTCAAACTGGATGACGTCCGCGAGTCGTTGTCGGAAATCGGCG TGCAGGGCATCACCGTCACTGAAGTCAAAGGCTTCGGGCGTCAGAAGGGTCACACTGAGCTGTACCGCGGTGCTGAATACGTTGTCGACTTCCTTCCAAA AGTGAAGATCGATGTTGCCATCGATGACAAGGATCTGGATCGCGTCATCGAGGCCATAACCAAGGCCGCCAACACCGGCAAGATCGGTGACGGCAAGATT TTCGTGGTCAATCTGGAACAGGCCATCCGCATCCGTACCGGCGAAACCGATACCGACGCAATTTAAGCCGCCAAACCCCAACGCCCCAGGAGAAAACAAT
|
|
| DNA Sequence for Gene |
>RT94_RS04060
ATGACTCTGCGTCAATTCGCAGGGCTAGGAGCCCTGTTGTCCCTTGCAGTACCTGGTCTGGCCCTGGCGGCTGATCCAGTGGCCGAGCCCGTGCTCAATT CCGGCGACACAGCCTGGATGTTGACGGCCACCGCGCTGGTCCTGTTCATGACCATTCCCGGCCTCGCCCTGTTTTACGGCGGCATGGTTCGCTCGAAAAA CATCCTGTCCGTGATGATGCAGTGTTTTGCCATCACCGGCCTGATCAGCATCCTGTGGGTCGTTTACGGCTACAGCATCGCGTTTGACACCACCGGTATG GAAGCTGGCGTCGTCAACTTCAACTCCTTCTTCGGCGGCATGGGTAAAGCGTTCCTGGCGGGCATCACGCCATCGAGCATTACCGGCGCTGCGGCATTGT TCCCTGAGGCGGTGTTCGTCACCTTCCAGATGACCTTTGCAATCATCACTCCTGCCCTGATCGTCGGCGCCTTCGCAGAACGCATGAAGTTCTCCGCGAT GCTGATCTTCATGGGTATCTGGTTCACCCTGGTCTACGCGCCAATCGCCCACATGGTCTGGGGCGGCGTCGGTGGCCTGATGTGGGACTGGGGCGTTCTG GACTTCGCTGGCGGCACCGTTGTGCATATCAACGCCGGTGTAGCCGGTCTGGTCGCCTGTCTGGTACTGGGCAAGCGTAAAGGCTTCCCGACCACCCCGA TGGCTCCGCACAACCTGGGTTACACCCTGATCGGTGCCGCGATGCTGTGGGTAGGCTGGTTCGGTTTCAACGCAGGTTCTGCTGCAGCCGCCAACGGCAC TGCTGGCATGGCCATGCTGGTCACTCAGATCGCGACCGCCGCTGCTGCACTGGGCTGGATGTTCGCCGAGTGGCTGACCCACGGCAAGCCAAGCGCTCTG GGCATCGCCTCGGGTGTGGTTGCAGGTCTGGTGGCTATTACGCCAGCAGCCGGTACCGTCGGCCCGATGGGTGCTCTGATCATCGGTCTGGCAGCAGGCG TGATCTGCTTCTTCTGCGCCACCAGCCTGAAACGCAAGCTGGGCTACGACGACTCCCTGGACGCATTCGGCGTGCACGGTATCGGCGGTATCGTCGGCGC GATCCTGACCGGCGTCTTCGCAGCGCCTGCACTGGGCGGCTTCGGCACGGTGACCGACATCGGCGCTCAGGTCTGGATTCAGTTCAAAGGCGTCGCGTTC ACGGTCGTTTACACAGCCATCGTGACCTTCATCATCCTCAAGGTGCTGGACGCGGTCATGGGCCTGCGTGTCACCGAAGAAGAAGAGTCTGTCGGTCTGG ACCTTGCGCAACACAACGAGCGTGGCTACAACTTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAGCCGCTGCGCTGAAAAAAGAATGCCCGGTTTTGCCGGGCATTTTTTTGTCTGACATTTGCGGATAAACCGCGGATTTCTGCTGTCACTGATGTGCCCG CGTCAATGATTTCGGCAACATGACGCAGCGCTTGTAACGTTGTCACGACAGTCTTCGTTAACTTGCAGGGAAGCCGGTTTATTGCGCGCTTTGCTTTTTT CTCAGGCGAGTTAGAATGCGCGCCGAAGGTGCGGAGAACGGTATGTGGCATCAATCCGGAATTACCTTGCGGGCCAGGCCTCGCGGGTTCCATCTGGTCA CTGACGAGATACTGGCAGGCTTGCCTCAGCTGCGGGATTGTCGAGTCGGTCTGCTGCACTTGTGGCTGCAACATACCTCGGCCTCGTTGACCGTCAACGA GAATGCCGATCCGGCAGTACGTCGTGACTTCGAACGTTTTTTCAACCGGCTGGTGCCCCAGGGCGTGGCCGGACATGAACATAACGATGAAGGGCCTGAT
|
|
| Amino Acid Sequence |
>ammonium transporter
MTLRQFAGLGALLSLAVPGLALAADPVAEPVLNSGDTAWMLTATALVLFMTIPGLALFYGGMVRSKNILSVMMQCFAITGLISILWVVYGYSIAFDTTGM EAGVVNFNSFFGGMGKAFLAGITPSSITGAAALFPEAVFVTFQMTFAIITPALIVGAFAERMKFSAMLIFMGIWFTLVYAPIAHMVWGGVGGLMWDWGVL DFAGGTVVHINAGVAGLVACLVLGKRKGFPTTPMAPHNLGYTLIGAAMLWVGWFGFNAGSAAAANGTAGMAMLVTQIATAAAALGWMFAEWLTHGKPSAL GIASGVVAGLVAITPAAGTVGPMGALIIGLAAGVICFFCATSLKRKLGYDDSLDAFGVHGIGGIVGAILTGVFAAPALGGFGTVTDIGAQVWIQFKGVAF TVVYTAIVTFIILKVLDAVMGLRVTEEEESVGLDLAQHNERGYNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|