Pseudomonas viridiflava LMCA8, RT94_RS03750
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTGTGCTCCTTGCGGATAACGTTGAGGCCCAGGTTGTGGAACGTCGACACCGTCAGGCCGCGTCCTTCACCCGCCCTGAGCAGCGTGCCGACCCGCTC CTTCATCTCGCGCGCAGCCTTGTTGGTAAAGGTCATGGCGACGATGTACTGGGCCTTGATGCCGCAGTTCTGGATCAGGTGCGCGATCTTGCGCGTGATC ACGCTGGTTTTGCCGGAGCCTGCACCGGCGAGCACCAAAAGAGGGCCGCCGACGTAGTTCACCGCTTCCTGTTGCCGGGGATTGAGTCGGGACATGACGG TCTGAAAGGTCGCTTGCGAAAAGGTCGGGCATTTTAGCAGGCCCGCAGGTTTCATGCGGCGGTCATCGCAGAAAGGTGGTAACGGCTATCTAATTTCTGC TTTTTTGTTACATTTGCGCCGCGGCGCGAAGAGAAGTGTATTCGTCGCGTTCCCGAGAGAGCGCGACCATCGTTTTTTCCTTTGAACTTAGGAAGTTAGA
|
|
| DNA Sequence for Gene |
>RT94_RS03750
TTGCCTACGCCTGTCGAACCCCTGCGGTTGCTTTTGCTGACACAAGAGCCATCCTGGCAGACGCTGTTGAGCGGTTGTCTGACCGATCCGGGCCATGCGG TCACGCTGTTGCACGCTGCCGACTGGCAGACGTTCTGTACCCGTTACGGCAACGAGCGCAACACGGTGTTGTTCACCACCCCCGGCCTGCAGCCGCCTAC CGGCAGTTGCACCTTGCCGATGGTGGTGCTGCTCGACGAAGAGCCGCTGGTGGGGCCGACCGGCGTCAATGACTGGCTGGTGCGCGATGCGCTGACGGAT GACACCCTTCGTCGCTGCCTGCGGCATGTTCGTGAGCGAAGCCGTCTTGAAGAAAACCTGCAGCGTCTGGCCGGGCAGGACACGCTGACCGGGATCGCCA ACCGGCAGGGGTTTCAGGCCATGCTGGCCGCACGTCTTGCCGGTGGCAACCATCTGGCGCTCGGGCATCTGGACCTGGACGACTTTCGCCGCGCCAATGA CGCCTTGGGTTATCAGGCCGGTGACCGACTGATTCTGCAGGTCGTGGGACGGGTGAAGAACCAGCTCCAGGCCGGCGACCAGATCGCCCGGTTGGGTGGC GACGAATTCGCTCTGCTGATCGATACCAATCAAGACGCCGAGCGGGCGACGCAAGTGGCCGAGCGCATTACCGATGCTCTGGCCGAGCCCTACTGGATCG GTGGTGAAAGTCTGTTACTCGGCTGCAGTCTGGGCATTGCTCATTCGCAGGCCGAGGCGGGCGCCGACTCACTGATGTGGCACGCGCACATCGCCATGCG TCAGGCCAAGAGTCTCAATGGCTGCACGTTTCATCTGTTCGACGAAAGCATCAATCGCAACGCCCGCAGCCTTGCGGACCTGGAAGGCGAGTTGCGCCGT GGGCTGCGCCGCGACGAACTGGAACTGCATTACCAGCCTCGACTGTGTCTGAGCACCGGCCGGGTGGTCGGGCTGGAAGCGCTGGTGCGCTGGCGGCATC CCGAGCGTGGGCTGCTGTCGCCCGACGAATTCGTGCCGCTGGCCGAGCAAAGCGGTTTGATCGTGCCGCTGGGTTACTGGGTCATCTTCCGTGCTCTGAG CGACATGCAAGTGCTCCGTGAACAGGGTTTCGCGCCGTTGCACATGGCGATCAACCTCTCGTTCCGGCAGTTTCAGGACAGTCAGCTGCTGGCGACCCTG AACCGTCTTATCGCTCAGCACGACATCGACGCGCACTGGCTGGAGTTCGAACTGACCGAAACCGCCGTCATGCGCCGCAGCGATCAGGTTCGGCAGACCA TGGACGCCCTCGGACGCCTGGGTGTGCGTTTCTCGCTGGATGACTTCGGTACGGGTTACTCGTCTTTCATGCACCTCAATAGTTTGCCGATCACGCTGCT CAAGATCGACAAAAGCTTTGTCGGTGAAATGGAAACCCGCGAGGAAAACCGCAAGCTGGTGCACGCCATGATCAATCTGGCGCACAACCTGAGTCTGGAG GTAGTCGCCGAAGGAGTCGAAACGCCGGGGCAACTGGCGCTGTTGCGCGGTTTTGCCTGCGATCAGTTGCAGGGTTACCTGATCAGCAGGCCGCTGCCGA TGCCACAGTTGGTCGAATGGCTGAGATCGGACGCGAGTCGCTGTGAAGCGTCCCGCAGCCCGGCGTCTTCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGTCAGCCCATGACGGTCTCACCGACCGGGTGTTTGCGCAGCAACCTTGCGGTCTTCCATTCGAACACCCCGGTGAGCGCCACGGCCGAGCAAAGCAGA CCCAGCGCCAGACCCCACCACACGCCCGGAGCCCCGCCGTTTGCGGAAAAGCCCAATAGCCATGCGGCAGGCGCCGCGATCAGCCAATAGGAGAGCAGAC CGACCAGGAAGGTCGTGCGCGCATCCTTGAGTCCGCGAATCGCGCCCATCGCAATGGTCTGTGTGCCGTCGAAGAATTCGAACCAGGCCGCAATGGCCAG CAACTGTACGGCCATGACCACGATGTCGGCGAACGCCGGGTCGTTGATGTCCAGAAACAGCCCGATGATCTGATGCGGTGCCAGCCAGAACAGCAGGCCG AACAGCAGCATCACCGTGCCGCCAAATCCGATCCCCAGACGTCCCGCAGTACGGGCCATGAGCATATTGCCAGCGCCGTAGTGCTGGCCGATGCGCATGG
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MPTPVEPLRLLLLTQEPSWQTLLSGCLTDPGHAVTLLHAADWQTFCTRYGNERNTVLFTTPGLQPPTGSCTLPMVVLLDEEPLVGPTGVNDWLVRDALTD DTLRRCLRHVRERSRLEENLQRLAGQDTLTGIANRQGFQAMLAARLAGGNHLALGHLDLDDFRRANDALGYQAGDRLILQVVGRVKNQLQAGDQIARLGG DEFALLIDTNQDAERATQVAERITDALAEPYWIGGESLLLGCSLGIAHSQAEAGADSLMWHAHIAMRQAKSLNGCTFHLFDESINRNARSLADLEGELRR GLRRDELELHYQPRLCLSTGRVVGLEALVRWRHPERGLLSPDEFVPLAEQSGLIVPLGYWVIFRALSDMQVLREQGFAPLHMAINLSFRQFQDSQLLATL NRLIAQHDIDAHWLEFELTETAVMRRSDQVRQTMDALGRLGVRFSLDDFGTGYSSFMHLNSLPITLLKIDKSFVGEMETREENRKLVHAMINLAHNLSLE VVAEGVETPGQLALLRGFACDQLQGYLISRPLPMPQLVEWLRSDASRCEASRSPASS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|