Pseudomonas viridiflava LMCA8, RT94_RS03750
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 126 | 271 | 6.0E-30 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 120 | 271 | 8.9E-23 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 289 | 549 | 3.8E-98 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 296 | 536 | 2.18746E-111 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 295 | 543 | 2.09E-87 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 297 | 531 | 7.9E-73 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 104 | 545 | 0.0 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 127 | 271 | 3.66257E-42 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 113 | 280 | 1.5E-37 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 108 | 278 | 4.6E-41 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 290 | 536 | 3.4E-110 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 129 | 282 | 1.41E-36 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 291 | 546 | 5.5E-91 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.