Pseudomonas viridiflava LMCA8, RT94_RS25215 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_63, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGAGATTGGCGACAACCTCGATGTGCTGGTGATCGACACGGCAGCCGGCATCGGTGAATCGGTGGTCAGCTTCGTACGCGCCGCGCAGGAAGTCC TGCTGGTGGTCTGCGACGAGCCAACGTCCATCACCGATGCCTACGCACTGATCAAGTTGCTCAATCGCGACTACGGCATGAATCGTTTCCGGGTGCTGGC CAACATGGCCCAGAGCCCTCAGGAAGGCCGCAATCTGTTCGCCAAGCTGACCAAGGTCACGGACCGCTTTCTGGATGTTGCGCTGCAGTATGTCGGGGCT GTGCCCTACGACGAATGCGTGCGCAAGGCCGTACAGAAACAGCGTGCCGTCTACGAAGCCTTCCCGCGCTCCAAATGCGCGCTGGCATTCAAGGCCATTG CCCAGAAGGTCGACACCTGGCCGTTGCCGGCCAACCCACGGGGTCACCTTGAATTCTTCGTCGAACGACTCGTTCACCAGACCAGTGCGGGGCCTGTCCA
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| DNA Sequence for Gene |
>RT94_RS25215
|fliA
ATGACAGCGAGCGGCTACCAGATGTACAGCAAGGCTTCCCGGAATTCGCAGTACGAGCTGATCGAGCGTTATGCGCCTCTGGTCAAACGTATCGCCTATC ACCTGCTGGCTCGCCTGCCAGCCAGTGTGCAGGTCGAGGACCTGATTCAGGCCGGCATGATCGGGCTGCTCGAAGTCTCGACCAAATACGATTCCACCAA GGGTGCGAGTTTCGAGACCTATGCGGGTATCCGCATTCGTGGCGCCATGCTCGACGAAGTGCGCAAGGGTGACTGGGCGCCTCGCTCGGTCCACCGCAAT ACGCGCATGGTGAGCGACGCAATTCGCGCAATTGAAGCGAAAACCGGACGTGACGCTAAAGATCACGAGGTTGCTGCCGAACTCCAGTTGAGTCTCGATG ATTATTACGGGATTTTGAATGACACCTTGGGCAGTCGCCTCTTCAGTTTCGACGACCTGCTTCAGGACGGCGACCATGAAGGGCTGCACGAGGACGGTGC CAGCGGTTCGCTTGAACCGTCACGGGACCTGGAAGACGAGCGCTTCCAGGCAGCCCTGGCCGATGCGATTGCCAATTTGCCGGAGCGTGAGCGTCTGGTC TTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGAGAGGTCCTGGGGGTCAGCGAATCGCGGGTCAGTCAGTTACACAGCCAGTGCGCAG CTCGTTTGCGAGGGCGTTTGGGGGAGTGGCGAGCGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGTCAAGGTGCGGCCTGGTCCGCACATTGGCTTCATGCCGGCTGTGCAGAGCGTTACGTGGTAACAGGATAGACAAGGCAGGAGCCTGTCGGGCGGTGC CTCGATGGGCTGTTCGTTCAGGTCTGTACCTGTCGTTTTGCCAAGCCCGTCGTCGTTTCGTACAGCCGGGGGTGTGCTGTGCCAGTATTGAGTGAACAGC GTGTTCAGGTGCTGAACGCGTTAAAGACTGCTTGGAGGTCGAATTGGACAAGAACATGAAAATCCTCATCGTTGATGACTTCTCAACGATGAGGCGGATC ATCAAGAACCTGTTGCGTGATCTGGGGTTCACCAACACATCGGAAGCGGACGACGGTCTGACCGCGCTGCCGATGTTGCAGAGCGGCGCCTTTGACTTTC TGGTGACGGACTGGAACATGCCTGGCATGTCCGGTATCGATCTGCTGCGCCAGGTCCGTCAGGACGAGCGCCTCAAGAGCCTTCCCGTGCTGATGGTCAC
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| Amino Acid Sequence |
>DNA-directed RNA polymerase sigma-70 factor
MTASGYQMYSKASRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRN TRMVSDAIRAIEAKTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLEPSRDLEDERFQAALADAIANLPERERLV LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEWRAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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