Pseudomonas viridiflava LMCA8, RT94_RS25215 (fliA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02479	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02479	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02479	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	94	162	1.26E-12
NCBIfam	TIGR02937	JCVI: sigma-70 family RNA polymerase sigma factor	IPR014284	RNA polymerase sigma-70 like domain	19	239	3.7E-34
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	189	237	2.3E-18
Hamap	MF_00962	RNA polymerase sigma factor FliA [fliA].	IPR028617	RNA polymerase sigma factor FliA	6	243	66.844696
FunFam	G3DSA:1.20.140.160:FF:000001	RNA polymerase sigma factor FliA	-	-	91	242	1.9E-77
Gene3D	G3DSA:1.10.1740.10	-	-	-	6	89	3.8E-23
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	20	92	1.5E-17
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	101	168	5.1E-11
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	193	205	8.8E-11
NCBIfam	TIGR02479	JCVI: FliA/WhiG family RNA polymerase sigma factor	IPR012845	RNA polymerase sigma factor, FliA/WhiG	20	240	2.0E-81
Gene3D	G3DSA:1.20.140.160	-	-	-	91	242	8.2E-43
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	167	243	4.49E-20
PIRSF	PIRSF000770	SigK_SigE	IPR000943	RNA polymerase sigma-70	3	244	2.1E-33
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	210	225	8.8E-11
SUPERFAMILY	SSF88946	Sigma2 domain of RNA polymerase sigma factors	IPR013325	RNA polymerase sigma factor, region 2	11	92	1.57E-23
CDD	cd06171	Sigma70_r4	-	-	183	237	7.73911E-13
FunFam	G3DSA:1.10.1740.10:FF:000002	RNA polymerase sigma factor FliA	-	-	6	89	1.7E-42
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	225	236	8.8E-11
PANTHER	PTHR30385	SIGMA FACTOR F FLAGELLAR	-	-	10	244	1.1E-50
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	47	60	8.8E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.