Pseudomonas viridiflava LMCA8, RT94_RS01365

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00173 Glutamate-aspartate symporter signature - - 35 54 6.2E-6
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 13 222 2.0E-42
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 14 211 4.06E-39
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 38 222 9.7E-17
PANTHER PTHR30450 ABC TRANSPORTER PERMEASE - - 8 223 9.1E-73
FunFam G3DSA:1.10.3720.10:FF:000002 D-methionine ABC transporter permease MetI - - 12 224 2.5E-88
PRINTS PR00173 Glutamate-aspartate symporter signature - - 62 81 6.2E-6
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 23 165 2.21137E-9
PRINTS PR00173 Glutamate-aspartate symporter signature - - 160 179 6.2E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.