Strain | Pseudomonas viridiflava strain LMCA8 contig_5, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGCGCACTGGACCCGCAGACCACTGCGTCGGTCCTGCAACTGCTGGCTGAGATCAATCGTGAGCTGAAGCTGACCATCGTGCTGATTACCCACGAGATGG ACGTGATTCGTCGCGTCTGCGATCAGGTCGCCGTCATGGACGCCGGCGTGATCGTCGAGCAGGGCAAGGTGGCCGATGTGTTTCTGCATCCGCAGCACCC GACCACCAAGCGCTTCGTGCAGGAAGACGAACAGATCGATGAGAACGAACAACGCGACGACTTCGCCCATGTCGAAGGCCGTATCGTGCGCCTGACCTTT CAGGGCGAGGCGACCTACGCGCCGCTGCTGGGCACCGTGGCGCGGGAAACCGGCGTCGATTACAGCATCCTGGCCGGTCGCATCGACCGCATCAAGGACA CACCTTACGGGCAACTGACGCTGGCCATTACCGGCGGCGACATGGACGCTGCATTCGCGCGCTTCACCGCCGCTGATGTCCACATGGAGGTGCTGCGCTG
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DNA Sequence for Gene |
>RT94_RS01365
ATGGACGCCTTTCTGAACCTGTTCTCCAACGTCGACTGGTATGAAATCTGGGTCGCCACCGGCGATACGCTGATCATGCTCAGTGTGTCGCTGGGCTTCA CTATCCTGCTCGGCCTGCCGCTGGGCGTGCTGATGTTCCTGACCTCGCCACGCCAACTGCTGGAACACAAGCAGCTGTACGCCACGGTCGGGCTGATCGT GAACATGCTGCGTGCCTTGCCGTTCATTATTCTGCTGATCGTCATGATGCCGCTGACCGAGATCATCACCGGCACATCGCTGGGCATTCTGGGCACGCTG CCGCCGCTGATTGCCGGTGCCACGCCGTTCTTTGCGCGTCTGGTGGAAACCGCCCTGCGTGAAGTCGACCGCGGCATCATCGAAGCCACACAGGCCATGG GTGCCACCACCCGGCAGATCATTCTCAAGGCGCTGCTGCCCGAGGCGCGGCCTGGCATCTTCGCAGCGATTACCGTCACCGCCATTGCGCTGGTGTCCTT CACCGCCATGGCAGGTGCTGTCGGTGCAGGCGGGCTGGGCGATCTGGCCATTCGTTATGGATACCAACGTTTTCAGAACGATGTGATGTTCGTGACGGTC GTATTGTTGCTGGTGCTGGTGCAGATTCTGCAAACCGTCGGCGACAGACTGGTCGCGCACTTCACACACCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TCGAATCAGTTGGCATCGGCCTGCCGCAGGCGGGCCTCAAAGGAGTTGTTGCATGAAAAAGCTATTGGCCGTATTTGCCGCCGTAACCGCACTGTCCGCA CAGGCCAACGAAACCCTGACGGTCGCAGCCTCGGCCGTGCCCCACGCCGAGATCCTGGAGTTCGTCAAACCGACCCTGGCCAAAGAAGGCGTGGACCTGA ACATCAAGGTCTTCAACGACTATATCCAGCCGAACGTGCAGGTGTCGCAGAAGCGCATGGACGCCAACTTCTTCCAGCACCAGCCGTATCTGGATGAGTT CAACAAGGGCAAGGGCACCGATCTGGTCGCCGTGACCAAGGTTCACGTCGAGCCCTTCGGTGCCTACTCGGACAAATTCAAGAAGCTGGACGAGCTGCCA AGCGGTGCCAACGTCGCGCTGCCCAACGATGCCACCAACGAAGGTCGTGCGCTGTTGCTGCTGGCCAAGGCCGGTCTGATCACCCTGAAGGACCCGACCA
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Amino Acid Sequence |
>D-methionine ABC transporter permease
MDAFLNLFSNVDWYEIWVATGDTLIMLSVSLGFTILLGLPLGVLMFLTSPRQLLEHKQLYATVGLIVNMLRALPFIILLIVMMPLTEIITGTSLGILGTL PPLIAGATPFFARLVETALREVDRGIIEATQAMGATTRQIILKALLPEARPGIFAAITVTAIALVSFTAMAGAVGAGGLGDLAIRYGYQRFQNDVMFVTV VLLLVLVQILQTVGDRLVAHFTHR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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