Pseudomonas viridiflava LMCA8, RT94_RS01285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCTTCGCCCAGCACAGCAATGGTGTGCTGAGCCGTCTGCGTCCCGCCAAGATCGAAGACCACCCGTTGCCCGGCCCTGCGGGGCGGGGCGCGATTCTGG TGCGCTTCGGTGAGGGTGATGATGCGCTGGTCGTGGTCATGATGCACCTCGCACTGGGGACGCGAACCCGAACGCGACAGTTGGCTTACATCCGCGAACT GATTGGCGGCTATCGTCATCAGGTGCTGATGGGCGACATGAACACTCACGCCAATGATCTGCTGGAACATTCGCCGCTACGGGATTTGGGTCTGTTGGCC CCGCAGATCGAAGCGACGTTCCCCAGCTGGCGGCCACAACGCTGCCTTGATCATATTTTGCTCAGCCCGACCCTGACACTCGAGCGCGTACAGGTGCTGG CTCAACCCATTTCCGATCACCTGCCGGTTGCTGTCGAGATCCGCCTGCCTGCTTCACTGTGTGGGGACTCGCTGCCTGTGCCCTCTGGTGGAAGCCTTGC
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| DNA Sequence for Gene |
>RT94_RS01285
ATGAGCGACGACGCGGAGCGTTGGAGAGAGAAGTACCTCAAGGGAATCGAACAACAGGACAAGCTTGAAAAGCGCTGGGATGCGCGGCTCGACCTGTTGC GGCGAGGTCTGGTACGAAGCAGTCTGGCCGCAGAAGGCTCTGACCGTGCTGTCGACGAATGCATGAAGGAAATGCGCGAAATCGTGCGCAAGGACGATAT GGATGCGGGCCTTGCGGCCTTGATTCCGCGTCTTGAAAAAGCCGTGCTGGATTCCGAGCACCGGCGCGAAGTCCGGGTCGGTCAGATCAGCACCGCCCTG ACCGCGCTGGTGACGCAACTGCAAGCCCTGCCGCTGCCGCGCGACGTGCGCAAGCCGCTCAAGCGGTTTGCCAAAGACCTTGAAGAGCGGGCCTCGCAGG CACGCGAGCTGCCGTTGCTGCTCAGTGAACTGAGCGGCCTGCAAGGCAAGGCACTGACCCAGCTGGAAAAACCTGAAGAAGGCCATCGACCCGGGTTGCT GGAGCGTCTGTTCGGCTCACGGGATGAGCATGGCGAGGCTCAACCCCATCCCGATGCTGTCATACCTGCCGAAACGCCGTCTTCTTCCGATCATGAGCGC GATGCCCCCCACGCAGAACAGTATGCACACGAGGATCCGGAGCCCGGAGCACCCGTTGAGCGTTCGGTCGAGCCTGCGCAAGTAGTTGCTGTCGCTCCAC ACGATGCGCCGGCAGTCGCTGCCACGCCTGAGCCTGTCGCTGCCATACCTTCCGAGCCGCCAGCGCAGGCGCCTGACGTTGAAGAGCCTGCAATCAGTCA GGCTGCCGAGCCGGCTCTTCCACCGATTGATGCAACACCATCTGCCCCGATGGTCGTCGTGCCTGTGGCCGAGCCCATGCTCGACAGTGATATCGAGGGC ATGCTGACGCCGACGCCGAGCGTGCCTTTCCAGCAGTTACCGGTGCCAGTCAGCGAGCATGAGGTGCCTGAAGAGGACGCTGACAGCGATGTTGATGAGC AGGCCGAAGACGATGGCTATGCCCTGCCCTCTGCGCCCGAACCGAGTTACAGCTCGGTGGCCGCACACATCGAAGAAACCTTGTTGGGGCTGCTTGCCGA CCTGACGCTGTCCGAGCACTACCGGCCTCAGGTCGAGGCCATGCAACTGCGGCTCAGGCACGGGTTAAATTGGTACGAACTGTTGCCAATCCTGGATGAT CTGGCCGTGCTGATGCTGGCGATCAACAACGGCGGGCAGCAGGAATTCGGTACTTACCTCAAGCAACTGAACGAGCGACTCGAGTCCTTTCAGAGCCACC TGCAGGCGGCCAGTGAAGACCATGCGCAGGGCGAGTCTTCGGTTCGTGACCTCAACGAGCAACTGCGCGAGCAGGTGGGCGGATTGCAGAGCAGCGTTCA GGACGCGTCCGACCTGCCCAGCCTCAAGCTGGTGCTGGATAATCGCCTGGAAGGCCTGCTCAGCACCATGGACGACTACCAGCGCAAGCGTGATACGCGT GAGCAGGAAGTTGCGTCCCGCCTGCAAAGTCTCGCCGCCCGGGTCGCGAGCATGGAGCAGGAAGCGCTGGGCTTTCGAACCAACCTTGAAGAGCAGCGGC AGAAGGCCCTGATCGACCCGCTCACGGGGCTTGCGAACCGCGCGGCCTGGGCAGAGCGACTCGAGCAGGAAATGATCCTCTGGCAGCAGCACAAGGACAG TTTGCTGGTCGGCATCCTGGATCTGGACCATTTCAAGCGGATCAACGACGGCTACGGGCATCTGGCGGGCGACAAGGTGTTGAAGATCGTCGCCAGCGTT CTGAAAAAACGCCTGCGGCCAGGTGATTTTCTGGCCCGTTTCGGTGGCGAAGAATTTGTGGTGCTGATGCCGGCCACGCCTGTCACCATAGGTCTGCAAT TGCTGAACGAACTGCGGGAAACCGTCGAACTCTGCCCGTTTCACTTCAAGGGCGAGCGCGTTACCATCACGGTCTCCATGGGCGTGACAGCGTTTCGCTC CGGCGAGCGCAGTGAAGTGGCTATCAAGCGCGCCGATCAGGCGCTGTACCGGGCCAAGGAAAATGGCCGGAACCAGGTCGAACAGGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGCTGTTCTGGACAAACAGCTGTCGTAGCGCATGAGCTATTGCTGCACGGTTTGTTATGATGTTGCATTAATCGCGCACGTAGTCTGATCCCATGAAG TTGTACCTCGCTGCTTTTCTCCTGATTGCCCTGACCGCCTGCTCCAGCGGCCCAAGACTGGACACCAGTCATCCCTCGGCAAACTTTGACGGACGTATTC AATACGTTGTCATGCATTACACCTCCGCCTCACTCGAGCGGTCCCTGCAATTGCTGACCCACGGCGAGGTCAGCAGCCATTACCTGATCAGCGATGACGC CTCTGCAACCATCTACAAACTCGTCGATGAAAGCGCTCGCGCCTGGCACGCGGGTGACAGCGAGTGGGATGGCCGCACCTGGCTGAACTCGAGCTCCATC GGCATCGAGATCGTCAATCCGGGGTACACCGAAACGCCGACAGGCCGTCTGTGGTATCCGTACACCGAGGCGCAGTACCAGTCGATCAAGGTGCTGCTCA
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| Amino Acid Sequence |
>DeoR family transcriptional regulator
MSDDAERWREKYLKGIEQQDKLEKRWDARLDLLRRGLVRSSLAAEGSDRAVDECMKEMREIVRKDDMDAGLAALIPRLEKAVLDSEHRREVRVGQISTAL TALVTQLQALPLPRDVRKPLKRFAKDLEERASQARELPLLLSELSGLQGKALTQLEKPEEGHRPGLLERLFGSRDEHGEAQPHPDAVIPAETPSSSDHER DAPHAEQYAHEDPEPGAPVERSVEPAQVVAVAPHDAPAVAATPEPVAAIPSEPPAQAPDVEEPAISQAAEPALPPIDATPSAPMVVVPVAEPMLDSDIEG MLTPTPSVPFQQLPVPVSEHEVPEEDADSDVDEQAEDDGYALPSAPEPSYSSVAAHIEETLLGLLADLTLSEHYRPQVEAMQLRLRHGLNWYELLPILDD LAVLMLAINNGGQQEFGTYLKQLNERLESFQSHLQAASEDHAQGESSVRDLNEQLREQVGGLQSSVQDASDLPSLKLVLDNRLEGLLSTMDDYQRKRDTR EQEVASRLQSLAARVASMEQEALGFRTNLEEQRQKALIDPLTGLANRAAWAERLEQEMILWQQHKDSLLVGILDLDHFKRINDGYGHLAGDKVLKIVASV LKKRLRPGDFLARFGGEEFVVLMPATPVTIGLQLLNELRETVELCPFHFKGERVTITVSMGVTAFRSGERSEVAIKRADQALYRAKENGRNQVEQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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