Pseudomonas viridiflava LMCA8, RT94_RS01285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 537 | 693 | 6.28219E-61 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 323 | 337 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 175 | 222 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 534 | 694 | 2.1E-47 |
| Coils | Coil | Coil | - | - | 483 | 535 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 316 | 337 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 541 | 694 | 4.39E-47 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 194 | 218 | - |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 527 | 695 | 1.1E-53 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 536 | 692 | 2.2E-43 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 530 | 695 | 1.8E-50 |
| Coils | Coil | Coil | - | - | 420 | 454 | - |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 526 | 696 | 8.9E-56 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 437 | 694 | 1.6E-65 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.