Pseudomonas viridiflava LMCA8, RT94_RS18745
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_40, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGGTGATGCCGGGCGTGGTTTTGCCGTGGTTGCCGACGAAGTCCAGCGGCTCGCCGAGCGTTCGTCTTCGGCCACCAAACAGATCGAGACGCTGGTGC GGGCGATCCAGAACGACACCAACGAGGCGGTCATCTCCATGGAGCAGACCACCAGCGAAGTGGTGCGTGGCGCGCGGCTGGCGCAGGATGCAGGCGTCGC GCTCGAAGAGATCGAAGGCGTGTCCAGAGTGCTGGCCGAGCTGATCGAAAGTATCACCGATGCCGCACGGCAACAGGCCGAGTCGGCCGGACAGATTTCC CAGACCATGAGCGTGATCCAGCAGACCACCTCACAGACCACCTCGGGCACCGCGGCAACCGCCGAGAGCATTGGCAACCTGGCGAAGATGGCCAGCGAAA TGCGTCGTTCGGTGTCGGGTTTCACCTTGCCGCCATCGAAAAAAATCGGATGATGTTCACTCAATGAACGATCTGGACCGGGTAAAGGGCGGTATCTGTC
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| DNA Sequence for Gene |
>RT94_RS18745
ATGGCTGATCGTCACGACTATGTGGCGCTGGAGTGGCTCAAGGGCGAGATCGCCGAGACGCTCACGCAGGCACGTCATGCACTGGACGAATTCATCGAAA ACCCTGCGGACGAGGCCGCGATAGCCGAGTGCCTGAACCTTGTGCATCAAGTGCATGGCAGCCTGCAGATGATCGAATTCTACGGCGCAGCGTTGCTGGC CGAGGAAATCGAGCAACTGGTGCTGGCCGTGCAGCAAAAGCGCGTCAGCCATCCGGTCGAGTCCGAGCAGTTGCTGATTCAGGCCATGACCCAGTTGCCG GTGTACCTGGAGCGCATTCATTCGGCGCGCCGGGATCTGCCTTTGGTGGTCCTGCCGCTGCTCAACGACTTGCGCAGCGCCCGTGGCGAAAGCCTGCTGT CGGAAACCAGTCTGTTCGCTCCGCAACTGGTCGTTGTTCCCGCTTTGGACGAGGAAGAACTGGCCCGGCGTAATACGCCTGATCTGCCCAATCTGTTGCG CAAGTTGCGTCAGACCCTGCAGGCCGCGTTGGCGGGCCTGATGCGCGAGCAGGGCGTCAAGACGCAACTCGGTTACATGGCCAAGGTATTCGCCCGTCTG GAACAGCTTTGTGAAGATGCGCCACTGGGGCCGCTCTGGCGAATCGCCACGGCGCTGGTCGAAACCATGCTCAATGGCAACTTCGCCAACAGTCCGGCAT TGCGCAGCCTGCTCAAGGATGCCGACAAGGAACTCAAGCGACTGGCCGAGCAGGGCATCGAAGGTATTAACCAGCCCGCGCCCGAAGAGCTGCTGAAAAG CCTGCTGTTCTACATCGCCAAGTCCGACAGCCTCGCGCCGAAGATGCTTGATCTCAAGGATCAATATGCGCTGGCCGATGCGCTGCCCGGCAACGACGTG GTCAACGAAGAACGTGCCCGCATGGCCGGGCCGGACCGTGATGCCATGCGTTCGGTCATCGTGGCGTTGTGTGAAGGGCTGGTGCGGGTCAAGGAGCGGC TGGATGTGTTCGTGCGCGGCGACCGGGAGCACGTCAGCGAGCTGAACCCTTTGCTGCCGCCGTTGCGGCAGATCGCTGACACCCTGGCGGTGCTCGGTTT CGGCCAGCCGCGCAAGGTCATCATCGACCAGCTTGCGGTGGTGCAGGGCATGGCGCATGGGCAGCGCGAGCCCAGCGATGCGGCGTTGATGGACGTGGCG GGTGCCTTGCTGTACGTCGAGTCGACCCTGGCTGGCATGGCGGGCAGTACCGAGCAAGACAGCCGTGAAGACAGCCGTCTGCCAACCACCGACCTGACCC AGATTCACCAACTGGTGATTCGCGAAGCGCGTGTGGTGCTGCAGCAGGCCAAGGACGTGATTCTGGAGTACATCGACAGTGAGTGGGACCGCCAGCGCCT TGATCCGCTGTGCGCCTTGCTGGTCCAGGTGCGCGGCGCGCTGGCGATGATTCCGCTGGCGCGAGCGGCCAGTCTGCTGGCGGCGTGCAACGAATACATT CAGGAACACCTGCTGGTGGACGAGACGCGTCCCGGCGCGATGCAGCTCGACTCTCTGGCCGACACCATCAGCTGCGTCGAGTACTACCTGGAACGCATGG GCGAAGACCATGAAGCGCCGGGCGACCAGATCCTCGACATGGCGCAGCAGAGTCTGGCCCGGCTGGGCTACACGCCAGCGCCGGACTCTCTGGAAGTGCC GCTGCTCGACGAAGTCATCACTCAGGACGAACTGCTGGCGCTGGACGACCGCAAGGCGCTGGTCAGCCCGACGCAGACCATCGCTCAAGTGCTGGCCAAA CCGGTCTCGGCCGTCAATCCGCCGGCCCGTAATGCGCCCACCAGCCTGCTGCCACCGCCCGCCGGTGAAGACGCCGTAGACGACGAACTGCGTGAAGTGT TTCTGGAGGAGGCTGACGAAGTACTGGACGCGCTGCGCGAGTACCTGCCTCGCTGGTTTGCTTCACTGGGCAAGGGCGATCAGTGGGATGTGGTCGCGCT GACCGAAGTGCGCCGTGCCTTTCACACCTTGAAGGGCAGCGGCCGAATGGTGCGGGCATTGATTCTGAGCGAACTGGCCTGGGCCGTGGAAAACCTGCTG AACCGCGTGCTGGAGGGCGACGTGCCGCCAGCGCTGGACGTCCAGCAGTTGCTGACCGATGTGCTGGCGTTGCTGCCGCTGGTCATCAAGGATTATGCCG AAGGGGCGCAGCGTCAGCGCGACGATGTCGACCTGCTGGCCGCGCGCGCTCATGCATTGGCCAACGGCCTGGAGCCGCCTGCGCTGCCGGTGCAGCCGAA CGAGCCCACTGTCGAAGTCATCGATCCGCAATTGCTGGAGATCTTCCGTCAGGAAGCCCTCGGGCACCTGGGCACGCTGGATCGCTTCCTTGAAAGCGCC GAACAGTCACCGTCGCCCTCGATCAGCGACAGCCTGTTGCGTGCCTTGCATACCCTCAAGGGCAGCGCACACATGGCGGGCGTTTTGCCGATAGCCGAAC TGGCCAGCCCGCTGGATCAACTGGTGCGCGAGTACAAGGCCAACCTGATCGCCATCGGCATGCCCGAAATCCGTCTGCTGCGCAGCGCCGAGCCGCTGTT GCGCAAGGGGCTGGAGCAACTGGACAGCCAGCCGCTGGCACCGATTCCCGGTGCGCCTGCCCTGATCGAGGCCGCCTGCGCGCTGCTCAATGACCGTCTG ACCGCTGCCCTGCGCGAGTCGGACAACGGCCTGCGTATCAAGCGTAATCCCAAGCTGATTGCCAGCTTCCTCGCCGAAGGCATGGACATCGTGCTGGATG CGGAAAACCTGCTGCGACGCTGGCGTGAACATCCCGGCGAGCGACAGGAGCTCAGTGCGCTGCTCGATGAGCTGACCACTCTGGGTCATGGCGCGCATCT GGCTGATCTGCCACAGGTGGATGAGCTGTGCGAAGCCTTGCTCGACCTGTATGGCGCAGTGGAAGAAAGCAGCCTGGCGGTCAGCGATCAGTTCTTCGAC GATGCCGAACGGGCTCACGAAGCGCTGATCAATATGCTCGATCAGGTCGCGGCCGGGCAGGACGTCGACCCGCGTCCCGAATGCGTGCGGGCCTTGCACG ACCTGCTCGAACAGGCGCTTGACCCTTCCGCGACCGGGCTGATCAAAAGCGATGGTCATCAAACGCTGAGTGTTACCGAACTCAATGCCGCCACCGCACA ACTGGCCAGCGAGGCCCCGCAGTCCGTCGCACCGCATTCTGAAGCGGCCAGCCTGGACGACGAGATTGTCGAAATATTTCTCGAGGAAGCCGTCGACATC CTCGACAGCGCCGGGCAGGCCCTGCAGCGCTGGCTGGACGAGCCGGAAAACCCGTTGCCGCTGTCTTCGCTGCAACGCGATCTGCACACCCTGAAAGGCG GTGCGCGGATGGCAGAAGTCGCCGAAGTAGGCGATCTGGCCCATGAGCTGGAAAACCTTTACGAAGGGCTGATCGATCGACGCTTCAACCATTCTCCGCA ACTGGCCGAACTGCTGCTCAAGAGCCACGACGAACTGGCGATCATGCTGGAACAGCTGTTTCGGCACGAAGCGCTCAGCGATCCGGCGCCACTGATCGAC GCGTTGATTCAGTGTCGCAACGGCGAGTTCGGCGAGCCTGAGCCCGTTGCGCCAACGAAACACGTCGAAGAGCCGCAGGAACGCGATACCGAACTGCTGG AAATCTTCCTCGAAGAAGGTTTCGACTTGCTGGAAAGCTCCGGCGCCTCCCTGTCGCGCTGGCAGGCGGATCCGCAGAACACGCTGGAAGTCGAGAACCT GCTGCGTGATCTGCATACGCTGAAGGGCGGGGCGCGCATGGTCGAGATCGCCCCCATCGGTGACCTTGCCCATGAGCTTGAAACGCTCTATGAAGGGTTG TCGTCAGGTGTCATGCAGGCTGATTCGCTGATGATGAGCCTGCTGCAGAGCGGCCATGACGTGCTGGCCGACATGCTCGATGCTGTGCGGACCGAAAAAC CGCTGCCTGATGCGACTCTGCTGATTCAAAACATTCAGAACCTCGCCAGCCAGGAACCCGGACAGCGGCTGCCGCTGGTGAACGCGCCCGAGCCGGAACC CGTGGCTGCACCAGCGGCCGCAGCGGATGCAGAGTCCGAGCGCAACGTGCCGGAGACGATCAAGGTGCCGGCCGAGCAGCTGGAGAATCTGGTCAACCTG GCGGGCGAGACCTCGATCTTTCGGGGACGCATCGAACAGCAAATGCTCGACGCTCAGGTCGCGTTGGTGGAGATGGAAACGACCATCGAACGGATGCGCG ATCAGTTGCGACGTCTGGACATGGAAACCCAGGGTCGCATCCTCAGCCGCGAGCAGGTGCAGGCCGAACGCCTTGGCTACGAAGAATTCGATCCGCTGGA AATGGACCGCCACTCCCAGTTGCAGCAGCTGTCCCGCGCGCTGTTCGAGTCGGCATCCGACCTGATGGACCTCAAGGAAACCCTCGGCGCACGCACGCGT GACGCCGAAATGCTGTTGTCGCAGCAGGCACGGGTCAACACCCAACTGCAGGAAGGCCTGATGCGTACGCGCATGGTGCCTTTCGAGCGCATGGTCCCGC GCTTGCGACGTGTCGTGCGGCAGGTTGCGACCCAGTTGAACAAAAAGGTGCAGTTCGAAGTGGCCAACGCCGACGGCGAAATGGACCGGAATGTGCTGGA ACGGATGGTCGCGCCGCTGGAGCACATGCTGCGCAACGCGGTCGACCACGGCCTTGAAAGCACTGAAAGGCGCCTTGCGGCGGGCAAGCCCGAGCAGGGG TTGATCACGCTGGAACTGATGCACGAGGGCGGCGACATCCTGATCGAGCTCAGCGATGACGGGTCGGGTGTCGATCTGGCCGCCGTGCGACGCAAGGCGA TCAAGCGCGGCATGATCCATCCCGATGCCGATCTTGCCGATCACGAGGTTCTGCCGTTCATCCTGCAGGCCGGATTCTCCACGACGGAAATCATCACGCA GATTTCCGGACGTGGCGTGGGCATGGACGTGGTGCACGCCGAGGTCAAGCAACTGGGCGGGTCGATGGTGATCGACTCGACGCCGGGCAAGGGCACTCGC TTCAGGATTCGCCTGCCATTCTCGGTCTCGGTCAACCGCGCGCTGATGGTCACCTGCGGCGAGGAGCAGTACGCCGTGCCGCTGAATACCGTCGATGGCA TCGTGCGGGTCATGCCCAATGAACTGGACACCTGCTACCAGACCAGCCCGCCGCGCTATCAGTACGGCGGACGCAGCTATGAATTGCGCTATCTGGGTGA GCTGATCGACAACAGCCCGCCACGCCTGATCGGCCAGCTCGAGCCGCTGCCGGTGCTGCTGGTGCACCTGCAGGACCAGTGGGTGGCCGTGCAGGTCGAT GCGCTGGCCGGCTCGCGGGAAATCGTGGTCAAGAACCTCGGCCCGCAATTCGCAAGGGTTCAGGGCATTTCCGGCGCAACCATTCTGGGCGATGGTCGTG TGGTGCTGATTCTCGACCTGATGGCGCAGATTCGTACCTTGCAGGGCCGCCTGCACAGACCTGCAACTGACGGACCGGTGCAGACATTCCATGAGATCGA ACAGGCCAGGCCGCTGCTGGTCATGGTGGTGGACGACTCGGTCACGGTACGCAAGGTGACCGGCCGACTGCTGGAACGCCACGGCATGCATGTGCTGACG GCCAAGGATGGTGTCGACGCCATGAGCCTGCTTCAGGAACACACCCCGGACATCATGCTGCTGGACATCGAGATGCCGCGCATGGACGGCTTCGAAGTGG CCAGCCAGATTCGTCACGACGAGCAGCTCAAGGATTTGCCGATCATCATGATCACCTCACGCTCTGGCCAGAAACACCGCGACCGCGCCATGGCGATTGG CGTCAACGAGTACCTGAGCAAGCCGTATCAAGAGAGCGTGCTACTGGACAGCATCGCCTACTGGAGTCAGGTCAATGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGCGCGTTCCAGACCAGCCGTCTGACCAGTCTTACCGGCCTGCTGCTGCCCTTGAGCGACCGGCATCTGTTGCTGCCCAATGTGGCCGTTGCAGAACTC ATCGACTATCAGGACTGCAGCGCTGAGCCAGGCGCGCCCGAGTGGTACCTGGGGCCTATCAGCTGGCGTGAACTGACCTTGCCGCTGCTCAGTTTCGAAG CCGCCTGCGGTGGGCGCACACGGGTCGGCGGTCGTGCCCGCATCGTGGTGCTCAATGCGCTGGGAGGACGCCATGACGTCCGGTTCATCGCCCTGCTGAC CCAAGGCATCCCGCGCTCCTGCAAGGTCGACAGCCAGTTGAGCTACGTCGACGTGCCCCTGACCGAGCTGGAACTGGCGGCGGTGCAGGTCGGCGACACC GTCGCCCGTATTCCCGATCTGGAAGGGCTGGAGCAATGGCTGGTCGATGCGGGGCTGGCCAATCCATCAGTGCGCGGCTGAAAGCGGACGCGGAGCGTCC
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| Amino Acid Sequence |
>histidine kinase
MADRHDYVALEWLKGEIAETLTQARHALDEFIENPADEAAIAECLNLVHQVHGSLQMIEFYGAALLAEEIEQLVLAVQQKRVSHPVESEQLLIQAMTQLP VYLERIHSARRDLPLVVLPLLNDLRSARGESLLSETSLFAPQLVVVPALDEEELARRNTPDLPNLLRKLRQTLQAALAGLMREQGVKTQLGYMAKVFARL EQLCEDAPLGPLWRIATALVETMLNGNFANSPALRSLLKDADKELKRLAEQGIEGINQPAPEELLKSLLFYIAKSDSLAPKMLDLKDQYALADALPGNDV VNEERARMAGPDRDAMRSVIVALCEGLVRVKERLDVFVRGDREHVSELNPLLPPLRQIADTLAVLGFGQPRKVIIDQLAVVQGMAHGQREPSDAALMDVA GALLYVESTLAGMAGSTEQDSREDSRLPTTDLTQIHQLVIREARVVLQQAKDVILEYIDSEWDRQRLDPLCALLVQVRGALAMIPLARAASLLAACNEYI QEHLLVDETRPGAMQLDSLADTISCVEYYLERMGEDHEAPGDQILDMAQQSLARLGYTPAPDSLEVPLLDEVITQDELLALDDRKALVSPTQTIAQVLAK PVSAVNPPARNAPTSLLPPPAGEDAVDDELREVFLEEADEVLDALREYLPRWFASLGKGDQWDVVALTEVRRAFHTLKGSGRMVRALILSELAWAVENLL NRVLEGDVPPALDVQQLLTDVLALLPLVIKDYAEGAQRQRDDVDLLAARAHALANGLEPPALPVQPNEPTVEVIDPQLLEIFRQEALGHLGTLDRFLESA EQSPSPSISDSLLRALHTLKGSAHMAGVLPIAELASPLDQLVREYKANLIAIGMPEIRLLRSAEPLLRKGLEQLDSQPLAPIPGAPALIEAACALLNDRL TAALRESDNGLRIKRNPKLIASFLAEGMDIVLDAENLLRRWREHPGERQELSALLDELTTLGHGAHLADLPQVDELCEALLDLYGAVEESSLAVSDQFFD DAERAHEALINMLDQVAAGQDVDPRPECVRALHDLLEQALDPSATGLIKSDGHQTLSVTELNAATAQLASEAPQSVAPHSEAASLDDEIVEIFLEEAVDI LDSAGQALQRWLDEPENPLPLSSLQRDLHTLKGGARMAEVAEVGDLAHELENLYEGLIDRRFNHSPQLAELLLKSHDELAIMLEQLFRHEALSDPAPLID ALIQCRNGEFGEPEPVAPTKHVEEPQERDTELLEIFLEEGFDLLESSGASLSRWQADPQNTLEVENLLRDLHTLKGGARMVEIAPIGDLAHELETLYEGL SSGVMQADSLMMSLLQSGHDVLADMLDAVRTEKPLPDATLLIQNIQNLASQEPGQRLPLVNAPEPEPVAAPAAAADAESERNVPETIKVPAEQLENLVNL AGETSIFRGRIEQQMLDAQVALVEMETTIERMRDQLRRLDMETQGRILSREQVQAERLGYEEFDPLEMDRHSQLQQLSRALFESASDLMDLKETLGARTR DAEMLLSQQARVNTQLQEGLMRTRMVPFERMVPRLRRVVRQVATQLNKKVQFEVANADGEMDRNVLERMVAPLEHMLRNAVDHGLESTERRLAAGKPEQG LITLELMHEGGDILIELSDDGSGVDLAAVRRKAIKRGMIHPDADLADHEVLPFILQAGFSTTEIITQISGRGVGMDVVHAEVKQLGGSMVIDSTPGKGTR FRIRLPFSVSVNRALMVTCGEEQYAVPLNTVDGIVRVMPNELDTCYQTSPPRYQYGGRSYELRYLGELIDNSPPRLIGQLEPLPVLLVHLQDQWVAVQVD ALAGSREIVVKNLGPQFARVQGISGATILGDGRVVLILDLMAQIRTLQGRLHRPATDGPVQTFHEIEQARPLLVMVVDDSVTVRKVTGRLLERHGMHVLT AKDGVDAMSLLQEHTPDIMLLDIEMPRMDGFEVASQIRHDEQLKDLPIIMITSRSGQKHRDRAMAIGVNEYLSKPYQESVLLDSIAYWSQVNV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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