Pseudomonas viridiflava LMCA8, RT94_RS17800

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_37, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGTGGTGAGCATCGACGGGCAAGGCAAACTGTTCGTCAACAAGGATGAAATCCAGCCGGACCTGCTGGAAACCAACCTGAAGGCCGCCAGGGAAAAAGCC CCGGATGTGCGCGTGCAACTGCAGGCTGACGACGGTGTGAACTACGGCGAGGTGGCGCGTGCCATGGCCTCTATCGAGCGTGCCGGGATTACCAAACTGT CGGTGATTACTGCCAGATAGCCGCTCTCAGGCTCAGAATATTCACTTTTTGGGGCCGCATTCTCAGGCAGATGCGGCCTCTTTTTTATGCCTCACCAGAG GCGTATTTCGGCTTGACGAAAAGGCAGCAGCTTATGCGTTATTGGTATTTAAAGCCTGATCTTTAGTAGCGTTAAGCTATAACCCATCGGTCCACCGGAA CATCAAATAAAACCGTCATGATCGCCACCGTCCACCGCACGGATCGCTCGTTGTCACCAGAACACGATGTTCTGGATAAGGGAATTCAAGGGGCTGCGGT
DNA Sequence for Gene
>RT94_RS17800
ATGGGGAGTTTCAAACGAAAAGTACTGGCCACGGCGATTTTCTCGGCAAATCTGCTGAGCGCTGCAGGTGTTAGCCCGGTCACGAAGGCTGAAGAAACTG TTGAGGACAACGCCCAGGCGCAAACCTCGACCCTGGGCACCGTCATTGTCACCGGTACACGAGCACAGGAACGTACCGCCAGTGGATCACTGTCGCCTAT CGACGTGATTTCCGGCGACAGCCTGCGCAGTTCCGGTTCAAGCGAACTAGGCACGGTGCTGGCACGCCTGATTCCTTCTATCAATTTTCCACGGCCCAGT CTGGTGGACGGTGCCGAGCTGGCCCGGCCGGCCCAGTTGCGCGGTCTTTCGCCTGATCAGGTACTGGTGCTGGTCAACGGCAAGCGTCGTCACACATCGG CCTTCGTCAATTTGGGTGGCGCGGTGGGGCGAGGCTCGGCGCCTGCGGACCTGAACGCCATTGCGCTGTCAGCCATCGATCACATCGAAGTGCTGCGTGA CGGAGCGTCGGCCCGTTATGGCTCGGATGCCATTGCCGGGGTGATCAACATCATCCTCAAGAATGCCGATCACGGCGGCTCGGTCTCGACACGCTACGGT CAGTACAAGAAAGGTGACGGCATTCAGCGCCAGGTCGCAGGCAACACCGGTTTTGCTCTGGGCAGCAATGGGTTTTTCAATCTGTCCGGCGAAGGTGCCA ATAACGATTACACCAACCGGGCTGGCGATGACCTGCGGGCGTCCAGCATCGGATCGACGACCTACGGCCAACGTGTGTTTCGTCAGGGCGAACCGGAAAC CGAAGAGGGCAAGGTCCAGTTCAACACCGAATACAGTTTCAATGACGCGTTGGAGTTCTACAGCTTCGGCGGCTACAGCAAGCGGCGGGGCGAAACCGCC GCGTTCTACCGTCCCAGCAATGCGTCCAACAACAACCCCGCCATTTTTCCCAATGGTTACCTGCCTCTGATTCACGGCACGCTGGAAGACACGTCGCTGG TCGCAGGTTTGCGTGGTGAACTGGCAAACGACTGGCACTACGATCTGTCCGCAAACTACGGCAAGAACAGCTATGGGATTCGTACCCGGACCATCAATAC GTCGCTGGGTCTGGCTACGCCGCGCTCGTTCGACAACGGCACGCTGACCCACGATCAGAAACAACTGAGCCTGGACCTGTCGCGGGAATTCAACGCGGCC TGGCTGCCTTATCCGGTGTCGTTAGCATTCGGCGCCGAGTATCTGCGGCAGGGTTATCAAATCGAAGCAGGGCAGGCCGAGTCTTATTTTCAGACCGGCA GTTCCGGGCTGGGTGGATTCCGGGCGGCCGATGCGGGCAGTTCCTCACGCCACAATTTCGCGCAGTATCTGGATGTGGAAACCAACCTGACCGAGAAGCT CGGCGTGTCGGCGGCAGTGCGCCACGAGGATTACAGCGACTTCGGCTCCAACATCAGCGGTTCGCTGTCGGCGCGCTATGACTTCACTCCGCAAGTTGCC CTGCGTGGCAGCGTTTCGACCGGTTTCCGCGCGCCGTCACTGGCCCAGCAGAATTTCACCTTCACCTCGTCGCAACTGATCGGCAACACCATTCAGGAAG CCGGTACGTTTCCGGCCGGCAGCAACGTTGCGCAACTGCTCGGCGCCGAGGACTTGAAGGCAGAGAAGTCCCGCAACTACAGCCTGGGGCTGGTGCTGGA GCCGCTGGACAACCTGACCGTTACGGCCGAAGTGTACCGCATCGACATTCGCGACCGGATCTCGCTGTCGTCCAATCTTGTGCTCAACAACACCGCGATC AACTACCTGCGCAACAATGGCGTGGGCGACATCAATTACACCAGTGCCCGCTACTTCACCAACGCCACCGACACCAGCACCGACGGCATCGATCTTGTGG CTAACTATCGCTATCAGTTCGATAACGGCGTGCGCTGGAACAGCACGGTCGGCTACAACTACAACCACACCAAAGTCACCGATGTAAAAGCCAATCCGGC GATACTCGATCAACTGGGCGTGAACCTGGTGCGGGTTGATCGTCGCGAACGTATCGGTCTGCTGGGCGATACCACGCCGCAGCACAAGCTCAGTCTGGGT AACGACTTCACGTTCGGGCCGTGGGCGCTGCACTCCAATCTGGTCCGTTACGGGGAATTCACCAGCTATCAGGCAGACAAGGTCAACGATCAGACCTTCA GTGCAGCCTGGCTTCTGGATCTCGCCGTGGATTACACGCACAAGAATTGGGTGTTCACCCTGGGAGGGGATAACGTGACAGACAAATACCCTGAAAAGCT CAACGACTTTGCGTCGAGCGGCGGCAACCTGGCGTACAGCACCTATTCGCCTTATGGCTACAGCGGGGCGTTCTATTACGGGAAGGTGGCGTACAACTGG TAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGGAAGGAACGCAACGCAGATCCAGGCGCAGTGAGCCGGGCAGCTCACCGCGCCTGATCATGATCAGATTACGCCAGCAGCTCGGTTCCCAGCTGGAACG CGACCCACAACGCCAGACCTGTGGCGAAGGTCAGTGCGATGTTTTCGAACAGGTTGTTGCGGTACTCCTTGGCCAGCAGGGATTTCTGGTTGGACATGAT CAGCAGGCCCAGCGAGATGATCGGCAGGCCGACGATGTTCAACGCGTTGACGCCCAGGGTCAGGGTCACGAAATCCGGCATGCCTGGCAGCGACCAGACC AGCGGGGTGACCAGAATGAACAGCATGAACCACTTGTGCATCGGATCACGGTGAAACTCTTTGCCGTAGCGTGTGCGGCGTTCGGGACGGATGTGCTGGA ACGCGTCGGTGATGAGCATCGGGAACGCGGTGGTCTTGCCGGAAATACTGGCGAACAGCGTGGCGAACACGCCGATGAAAAAGATGTACCAGCCCAGCGG
Amino Acid Sequence
>ligand-gated channel
MGSFKRKVLATAIFSANLLSAAGVSPVTKAEETVEDNAQAQTSTLGTVIVTGTRAQERTASGSLSPIDVISGDSLRSSGSSELGTVLARLIPSINFPRPS LVDGAELARPAQLRGLSPDQVLVLVNGKRRHTSAFVNLGGAVGRGSAPADLNAIALSAIDHIEVLRDGASARYGSDAIAGVINIILKNADHGGSVSTRYG QYKKGDGIQRQVAGNTGFALGSNGFFNLSGEGANNDYTNRAGDDLRASSIGSTTYGQRVFRQGEPETEEGKVQFNTEYSFNDALEFYSFGGYSKRRGETA AFYRPSNASNNNPAIFPNGYLPLIHGTLEDTSLVAGLRGELANDWHYDLSANYGKNSYGIRTRTINTSLGLATPRSFDNGTLTHDQKQLSLDLSREFNAA WLPYPVSLAFGAEYLRQGYQIEAGQAESYFQTGSSGLGGFRAADAGSSSRHNFAQYLDVETNLTEKLGVSAAVRHEDYSDFGSNISGSLSARYDFTPQVA LRGSVSTGFRAPSLAQQNFTFTSSQLIGNTIQEAGTFPAGSNVAQLLGAEDLKAEKSRNYSLGLVLEPLDNLTVTAEVYRIDIRDRISLSSNLVLNNTAI NYLRNNGVGDINYTSARYFTNATDTSTDGIDLVANYRYQFDNGVRWNSTVGYNYNHTKVTDVKANPAILDQLGVNLVRVDRRERIGLLGDTTPQHKLSLG NDFTFGPWALHSNLVRYGEFTSYQADKVNDQTFSAAWLLDLAVDYTHKNWVFTLGGDNVTDKYPEKLNDFASSGGNLAYSTYSPYGYSGAFYYGKVAYNW
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site