Pseudomonas viridiflava LMCA8, RT94_RS17800
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 195 | 799 | 1.8E-63 |
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 36 | 185 | 2.5E-28 |
| CDD | cd01347 | ligand_gated_channel | - | - | 66 | 800 | 2.09954E-72 |
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 303 | 789 | 1.9E-44 |
| PANTHER | PTHR47234 | - | - | - | 14 | 800 | 0.0 |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 63 | 181 | 1.5E-18 |
| SUPERFAMILY | SSF56935 | Porins | - | - | 47 | 800 | 1.13E-102 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.