Pseudomonas viridiflava LMCA8, RT94_RS11340

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_22, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGCTGGTGATGCTCAAGGACTTGGGCCTTAAAGTCGCGCTGGACAGCAGCGGTCTGGCGTTGCGGGCCGGTCTGGCGGCAGGTCCTTGGCTGATCAAACC CAACACGGAAGAATTGGCCGACGCGCTGGACGCGCCGATCATCTCCATCGCCGCTCAGGCCGAAGTGGCGGCGCGTCTGCACACTCAAGGCATCGAGCAC GTGGTGATTTCCCAAGGTTCGGAAGGTGTCCACTGGTTCAGCCCGAATCTGGCGCTGCACTCGCTGCCGCCCAAGGTCACTGTCGCCAGTACCGTCGGTG CGGGCGACTCACTGCTGGCGGGCATGGTTCATGGCCTGATCAGTGGCGATGGACCTCACACGACACTGCGCACCGCCACGGCGATCGCTGCCATGGCCGT TACCCAGATCGGTTTCGGCATCACCGACACCGCACAACTCAAGCGGCTCGAAGGCGGCGTCTCCGTGCGCAACCTGACAGAACAATAAGAGAGGATCGTC
DNA Sequence for Gene
>RT94_RS11340
ATGAAGTTAGCCATAGTAACGGCCTGCCCGAACGGCAAGGTCAGCAGCGTACTCAGTGCACGATTGCTCGAAGCGGCGGCGATGCGTCAGGGCTGGGAAA CCAGCGTCGAGATCATCGACCCCAACAAGCCGGATCGCCAACTGTCGGCCCAGGACATCGAGGCCGCCGATCTGGTGCTGGTCGTCAACACCGGACCTGT GGACCTGAGCCGTTTTGTCGGCAAGCGTCTGTTTCAGGATTCTCCGTCTCACGCCTTGCAGGATGTCGATGGCTTCCTGCAACGCGCCAACAAGGACGCG CAGGTCCATGTTGCACAAGAAGCTGCCGCCCCTGAAGCAGCTGGCAGCGCGGGTGGTCAGCCGCGTATCGTCGCGATTACCGCGTGCCCGACTGGCGTGG CGCATACGTTCATGGCCGCCGAAGCCATCCAGCAGGCTGCCAAGCGTCTGAACTATGACCTGCAGGTCGAGACGCAGGGTTCGGTTGGCGCACGCAATCC ATTGAGCCCGCAGGCCATCGCCAACGCCGATGTGGTGTTGCTGGCTGCGGATATCGAGGTCAACACCGATCGTTTCGTCGGCAAGAAAATCTATCGTTGC GGCACCGGCATTGCCCTCAAACAGTCCGACGCCACGCTTAAGAAAGCGCTGGCAGAAGGTCAGGTCGAATCCGATGCAACGGCGGCCAAGTCGCCTGCGA GGCAAGAGAAGACCGGCGTGTACAAGCACCTGTTGACCGGTGTGTCGTTCATGCTGCCGATGGTCGTGGCCGGTGGTCTGCTGATTGCGCTGTCGTTCGT GTTCGGCATCACTGCGTTCAAGGAGCAGGGCACGCTGGCGGCTGCGTTGATGCAGATCGGTGGTGAGGCAGCATTCAAACTGATGGTGCCGCTGCTGGCC GGTTACATCGCGTACTCCATCGCTGACCGCCCGGGCCTTGCGCCGGGCATGATCGGTGGTTTGCTGGCGAGCACACTGGGTGCCGGTTTCATAGGCGGTA TCGTGGCAGGCTTTCTGGCCGGTTACAGCGCCGCAGCGATCAATCGTTACGCACGCCTGCCAGCGAGTGTCGAAGCGCTCAAGCCGATCCTGATCATCCC GTTGCTGTCGAGCCTGTTCACCGGTCTGGTGATGATCTACGTGGTCGGCAAGCCGGTTGCAGGCATGCTTGAAGCTCTGACTCAGTTCCTCGACAGTATG GGCACCACCAACGCCATCCTGTTGGGTGTGGTACTGGGCGCGATGATGTGTGTCGACCTGGGTGGACCGATCAACAAGGCGTCTTACGCGTTCTCGGTCG GCCTGCTGGCTTCGCAGAGCTACGCGCCGATGGCCACCGCGATGGCGGCGGGCATGGTCCCGCCAATCGGCATGGGCATCGCCACGCTTCTGGCGCGTCG CAAGTTCGCCCAGAGCGAGCGCGAGGCAGGCAAGGCGGCGTTTGTACTGGGGCTGTGCTTCATCTCCGAGGGTGCGATTCCGTTCGCGGCCAAGGACCCG TTGCGCGTGATCCCGGCAAGTGTCGTTGGCGGAGCGCTGACCGGTGCGCTGTCGATGTACTTCGGCTGCAAACTCATGGCCCCGCACGGCGGCCTGTTCG TCATGCTCATCCCCAACGCCATCAACCATGCGCTGCTTTATCTGTTGGCTATCGCGGTAGGCAGCGTGGTGACGGGCGTGGTGTATGCGGTGTTGAAGCG GCCAGAAGTGGCCGAACTGGAAGTTGCCCCGGCCAGCGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AACCCCTGCCCAGGAAGCTCTGCGTCCGCTGCTGATGTGACGTAGAGCGTCACGGGCTGTATGCCCATGCGGAGCACTCATCGTTATACACAAGTCCGCA AGACGCGCAAAACGGGGGCCTAAACGAAAGTGACTGACTGAATGCATACCCCGTGGGAGGCGGTTTGCCGGCGATGGCGTCAGTTCAGTCACTGACAGGT CGCTTCAGAAAAAGCATCGCCGGCAAGCCGCCTCCCACAGTCCGTGGTCGCAGCAAGACTCGGGTATAACGCTGAGCACAAGCATGGGCATGATCGGCGT GCTTGAGATCACGCTGATCGTTCCTACGCTCCGCGTGGGAATGCCTCCCAGGACGCTCCGCGTCCGCACTTGAATGTGGCGCAGGTGCGTGGCCAAGCTC CAGCGTTACCCACGTCATGCGCTCGACTCACTGAGTCCGCAATCTGTGCCATTTGTGACGCGGAGCGTCACAGGATGCATGCCCACGCGGAGCGATGGGC
Amino Acid Sequence
>PTS fructose transporter subunit IIBC
MKLAIVTACPNGKVSSVLSARLLEAAAMRQGWETSVEIIDPNKPDRQLSAQDIEAADLVLVVNTGPVDLSRFVGKRLFQDSPSHALQDVDGFLQRANKDA QVHVAQEAAAPEAAGSAGGQPRIVAITACPTGVAHTFMAAEAIQQAAKRLNYDLQVETQGSVGARNPLSPQAIANADVVLLAADIEVNTDRFVGKKIYRC GTGIALKQSDATLKKALAEGQVESDATAAKSPARQEKTGVYKHLLTGVSFMLPMVVAGGLLIALSFVFGITAFKEQGTLAAALMQIGGEAAFKLMVPLLA GYIAYSIADRPGLAPGMIGGLLASTLGAGFIGGIVAGFLAGYSAAAINRYARLPASVEALKPILIIPLLSSLFTGLVMIYVVGKPVAGMLEALTQFLDSM GTTNAILLGVVLGAMMCVDLGGPINKASYAFSVGLLASQSYAPMATAMAAGMVPPIGMGIATLLARRKFAQSEREAGKAAFVLGLCFISEGAIPFAAKDP LRVIPASVVGGALTGALSMYFGCKLMAPHGGLFVMLIPNAINHALLYLLAIAVGSVVTGVVYAVLKRPEVAELEVAPASA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site