Pseudomonas viridiflava LMCA8, RT94_RS11340

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0022877 protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd05569
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02378
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02378
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02378
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005351 carbohydrate:proton symporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01427
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.2300:FF:000014 PTS system fructose-like transporter subunit IIB - - 117 223 1.5E-35
Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IPR003501 Phosphotransferase system, EIIB component, type 2/3 125 209 6.7E-18
Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IPR003501 Phosphotransferase system, EIIB component, type 2/3 5 91 3.8E-8
SUPERFAMILY SSF52794 PTS system IIB component-like IPR036095 PTS system IIB component-like superfamily 2 102 1.01E-22
CDD cd05569 PTS_IIB_fructose IPR003353 Phosphotransferase system, fructose-specific IIB subunit 3 96 6.21567E-23
SUPERFAMILY SSF52794 PTS system IIB component-like IPR036095 PTS system IIB component-like superfamily 122 219 1.03E-34
Pfam PF02378 Phosphotransferase system, EIIC IPR003352 Phosphotransferase system, EIIC 247 509 2.6E-19
Gene3D G3DSA:3.40.50.2300 - - - 114 221 8.5E-39
PANTHER PTHR30505 FRUCTOSE-LIKE PERMEASE - - 117 572 0.0
NCBIfam TIGR01427 JCVI: fructose-specific PTS transporter subunit EIIC IPR006327 Phosphotransferase system, fructose IIC component 230 566 0.0
Gene3D G3DSA:3.40.50.2300 - - - 1 103 6.6E-21
CDD cd05569 PTS_IIB_fructose IPR003353 Phosphotransferase system, fructose-specific IIB subunit 123 218 3.64646E-41
NCBIfam TIGR00829 JCVI: fructose PTS transporter subunit IIB IPR003353 Phosphotransferase system, fructose-specific IIB subunit 124 207 1.0E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.