Pseudomonas viridiflava LMCA8, RT94_RS08420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTAATGCCGCCCTTGAGCTGTTCGGCAATGGCCAGGTCCGTGCCGTCACGCACGAAATCCTCATCGACCCATTTGCCCTCGGCCGGCCAGATATGGTC CTGCAACCAGGTCATCAGCGGCAGATCGTCGGCCAGCCCCCGGAACAGGGTCATCGCCGCGTGACCGTGGGCGTTGATCAGGCCGGGGCTCAGGAGCATG CCGGGCAGCTCCCTAACCTGCGCAGCGTTCTGCTTCAGCGCCTCGGCTTTCGGGCCTATGTAAACGATGAGGCCGTCACGGATGCCGATGCCGTGTTCCT TGAGGACCACGCCTGCGGGCTCGACCGGTACCAGCCAGGTGGGCAGGAGCAGAAGGTCGAGCGGTGCTGTGGCGTTCGGCATGACAGGGCTTCCAGAGCT TATTACGGTGATGGCGAAGTATACCCGAGCGTCTTGGCGGGCGGCTCGCTATAATCAGCCGCTTTTGATTCTGGCTTTGGATTTCAAGATGGAGTGGGCG
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| DNA Sequence for Gene |
>RT94_RS08420
ATGCGCGATCGACTGTTGGCTGCGGAGAAAGTAAAGGCCATCGATTGGCGGGACGACGCTCTGTACCTGCTGGATCAGCGGGTACTGCCGTTCGAGGAAA CCTGGCACGCCTACACCAGTGCTGCGGGCGTGGCGGAGGCCATTCGCTCGATGGTCGTGCGCGGTGCGCCTGCCATCGGCATCAGTGCTGCCTACGGCGT GGTGCTCGGTGCGCGGGCCAGGATCGCGGCCGGTGGCGACTGGCGATCAGCGCTGGAGGACGATTTCGCGCTGCTTGCAGACTCACGTCCTACGGCGGTC AACCTGTTCTGGGCACTGAATCGCATGCGTGATCGCTTGCAGCGTCTGAAGGCGACGGATGATCCGTTGGTGTTTCTGGAAGCTGAAGCCGTGGCCATTC ACCTGAGCGACCGCGAAGCCAACCTGACCATGGCCCAGCTCGGCGCCGACCTGATTCGCAAGCATCAGGGCAATCTGCAGACCGTGCTGACCCACTGCAA CACCGGGGCGCTGGCAACCGGCGGTTTCGGTACGGCACTGGGCGTGATCCGTGCGGCGCATCTGGAAGGCATGATCGAGCGCGTCTACGCCGATGAAACC CGTCCCTGGCTGCAGGGCTCCCGGTTGACCGCCTGGGAACTGGCCAACGAAGGCATTCCGGTGACCTTGAACGCCGACTCCGCCGCCGCTCACCTGATGC GCACCAAAGGCATCACCTGGGTCATCGTCGGTGCCGACCGCATCACGGCCAACGGCGACGTGGCGAACAAGATCGGCACTTACCAGCTGGCGGTCGCTGC CATGCACCATGGCGTGCGCTTCATGGTGGTTGCGCCGAGTTCGACCATCGACATGGACATGGCCAGCGGCGAAGACATCGTCATCGAAGAGCGCGACGGT CGCGAGCTGCTTGAAGTGGGCGGTCAGCGGGTGGGTGCCGACGTCGATGCCTTCAACCCGGTCTTCGACGTGACGCCTGCGGACCTGATTGATGCGATCG TGACCGAAAAGGGCATTGTCGAGCGTCCCGATACCGCCAGAATGGCCCAGTTGATGAGCCGCAAACATCTTCATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGTTTCATCTCTCCATGATCGCCTTGGGAGTGGGGCGGCTGAACGGGCCTGTAAGCGTCTCTCAGCCGTCCTGAGTGGATGTGGCTCGTTTTCAGCGCTT GCAAAGGATGTGAGCACCTCGGCGATTGTGGTAACATCCGGCGGTTTCCGGGGACGCTATTCGTAGCCTCCCGCACTGTGCAGAACCAAGTCTTAACTCA TTGATTTGTCGTAAGTCGTTGCCCGGCACATGCTGGCAGCGGCGAGCTTCGTTTACCCCGAATGGGTTTGCGAGGTTTCACCAGAAAAAGGAATCAGGCT TCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAGCAGTCCTACCTCGACTACGCAATGAGCGTTATCGTCGGTCGA GCTCTGCCGGATGCGCGCGATGGCTTGAAGCCCGTGCACCGGCGCGTGCTGTTCGCAATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAAT
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| Amino Acid Sequence |
>methylthioribose-1-phosphate isomerase
MRDRLLAAEKVKAIDWRDDALYLLDQRVLPFEETWHAYTSAAGVAEAIRSMVVRGAPAIGISAAYGVVLGARARIAAGGDWRSALEDDFALLADSRPTAV NLFWALNRMRDRLQRLKATDDPLVFLEAEAVAIHLSDREANLTMAQLGADLIRKHQGNLQTVLTHCNTGALATGGFGTALGVIRAAHLEGMIERVYADET RPWLQGSRLTAWELANEGIPVTLNADSAAAHLMRTKGITWVIVGADRITANGDVANKIGTYQLAVAAMHHGVRFMVVAPSSTIDMDMASGEDIVIEERDG RELLEVGGQRVGADVDAFNPVFDVTPADLIDAIVTEKGIVERPDTARMAQLMSRKHLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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