Pseudomonas taetrolens DSM 21104, TU78_RS02245
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 1_766794_46.3544, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGAAGCTGCCGCCAGCGGTGTAGCAATTGAGAAGCGGCGGGAAAACCTTGTGCGGCAAGGCGGCCGACATGAACAGCGGGTTTTTCCACAACCGGTCG AGCATTGCAGCACCGATCTCATGGCCCAACGGATGGCCTTCGGGCAATTGCAGGTTGTGCTTGGCCTTGGCCGACTGAAAACCTGCAGTGATTTTGCCGT CAGCCCAGTCCGTCTGCTGCAGGGCCTCGCGGATGCGCACGACTTCCTCACGGGAAAACAAGCCGGGAATATGCAGCAGCATGGCGCGATACCTGAAAGC AAAGGGATGCCAATGGTATTGATTCTTATTGATTGTGTAAAACCCCGTTAAGAAAAGGGGTTACGAAGGGACGTGAAAAAAACGTCAAGAGAAACTGTAA AGAATGTAAGTTTTGCGCAAATAGCAATCTCTCTCAATTGATACAAGGAATTGTTTGCACTATATTTTGCGACTCAAATTCTGGGGGAAGGGTTCTACAC
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| DNA Sequence for Gene |
>TU78_RS02245
ATGTCGCGCCAACCGATAAAAATACCTGTCAGCTCACCGCGGCTCCTGGCCTCGGCCATTGGCGTCGCCCTCACGGCGACCTCCGCTGCCCATATGGCAC AAGCGGCCGAGAGCACAGAAAGCAAAGCACAGGGCAACAGCATTTCCCTCGGCGCGACAACCGTTACGGGTGAGCAGACTGAACAGTCGTATCAGACTGA AAAAGCCAGCTCCCCTAAATACACCGCCCCCCTGATCGACACGCCCCGCTCGATCACTGTGGTCCCGCAGCAGCTAATCAAAGACACTGCCGCCACCTCA CTGCAAGACGCCCTGCGCACTGTCCCGGGTATCACTTTTGGCGCAGGTGAAGGCGGAAACCCTCAGGGTGACCGTCCATTCATCCGCGGCTTCGATGCCC AGGGTGATACCTACCTTGACGGTGTTCGAGATACAGGTGCCCAGAGCCGCGAAATTTTCGCGATTGAAACAATTGAAGTTTCCAAGGGCCCGAATTCGGC ATTTGGCGGACGTGGTGCAGCTGGCGGCACCATCAACATGATCAGCAAAAAAGCCCACCTGGGTAACTCGTTTGACGCCGGTTACACCTGGGGTTCAGAC CAGACTCAACGCTACACACTGGACGGTAACTACCAGTTCAGCGACACCGTTGCCGGCCGCTTGAACCTGATGAGCCACGAAAGCAATGTGGCCGGTCGCG ACAAGGTCAATTACGACCGCTGGGGCATTGCACCTTCGCTGGCGTTTGGCCTGGGCACAGACACCCGCGTCAACCTTGATTACTACCACATGGAAAGCAA CGACCTACCGGACTCGGGCATTCCATACGGTTTCTCCGTGGGTAAAACCCACACTGCCGCCAGCCCGGACAAGCCGACCAATGGCGGCGACAGCAGCAAT TTCTATGGTCTGACCAATCGTGATTTCCGCAAAACACGCGCTGACATCGCGACCTTTGCGTTTGAGCATGATTTCAATGAAAACCTGACCATCAAGAACA CCCTGCGTCATGGCAATACCATGCAGGACTACATCCTGACCCAACCGGATGACAGTAAAGCCAACGTCAACAACGGCAGCGTCTGGCGCCGTGCCAACAC CCGGGTAGGCAACACTGCCACCACGACCAACCAGACAGACCTCTTTGGCGATTTCTACGTCGCGGGCTTCAAAAACAGCTTCTCCACCGGTATCGAGATC AGCCGCGAGACCAGCGAGAAGTCGTCGTATACCGTCGACACCAATACCAATGGTTCCTCGGCCTCGGCCTGTGACCCGTCCATGATCGGCGCACCAAGCG GCTACAACTGCACATCCCTCGGTAACCCGAACCCGGATGATCCTTGGAGCGGTTCGATCGCACGTAACTACGCGGGTACCGACACGTCCAGTACCACTCG CGCAATTTACGCGATGGACACTCTGGAACTGTCGCCTGAGTGGTTGTTGAACATGGGACTGCGTTACGACCATTTCGACACCAAGTACAAGTCCTATACG GCTGCAGGTGCGACGACCTATAAAGGCAATGATAAAAGTGACTTCTTCACTGGCCAGTTGGGCCTGGTCTGGAAGGTGGCACCTAACGGCAGCATCTACG CCTCTTACGCCACATCGGCAACACCTCCAGGAGCAATGCTGGGTGAAGGTACCGATGGCAACCCATTGAGCGGTACTCCAGATCGCACCGGCAAGCTGAT CGACAGCGACATGGAACCTGAAGAAACCACCAATTACGAGATCGGTACCAAGTGGGATGTACTCAATGACCGTCTGTCTCTGACTGCTGCAATCTTCCGC ACCGAAAAAGAAAATACCCGCGTGCAGGTCGACGCCGACTCTTATGAGAACGCCGGTAAAACCCGCGTCGACGGTATAGAGCTGTCTGCAACCGGTAAGA TTACCGATCAATGGCAGGTGTTTGCAGGCTATAGCTACATGGATGGCAAGCAACAGGATGGCGGCCCGCTGAACAAAGCCACCAACGGTAACCAGTTACC TAACACCCCGCGTAACAGCGCCAGCCTGTGGACAACCTACGCAATCACTCCCAAGCTGAGCATCGGTGGTGGCGCATTCTACGTTGATGAAGTATTCGGT AACGTGGCTAACACTACTTACGTTCCGGCATACACCCGCTATGACGCCATGGCCAGCTACAAGCTGAGCAAAAACGTTGATCTGCAACTAAACGTGCAAA ACCTGACTGACAAGACCTACTACGACAAAGCCTTCTCCACCCACTTTGCTAACCAGGCAGCGGGTCGTACTGCCTTGTTGACCACCAGCTTCCACTTCTA A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCGGAGTTAAGCTGTGCAAAGCCCCGCCCATCTGATGGCCGGGGCTTTTGCGTGTAAAAAGACTGATGCGGCACTCGACGCCGCGATGAATTCAATTGA ACGAGCAAGGCGGTTGTCGTGTTTAAGAAAACCCTGTTCCAGCTGCACTGGTTTTTCGGGATAACCGCCGGGTTGGTTCTGGCCCTGATGGGGATCACTG GCGCTATGGTGTCGTTTCAGGACGAACTGCTGAACCTGCTCAACCCTTCAGTGCTAAAGGTCGAAAAGCTCGACAGCGGAGTGTTGCCACCCGCCGAGCT GGTGCGCAAGGTCGAAGCCATCGAAGGCAAGCAGGTGTCCATGCTGTGGGTCGGCGTGGACAGTGACAGCGCTGCGCGGATTTTCTTTACCCCGCCACCG GGCGAGCGCCGGGGCCAGTTGCGTTATGTCGACCCTTACACTGGCGAGTATCAAGGTGATGCGAACGGTCAGGGTTTCTTCAATCTGATGCTGCAACTGC
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| Amino Acid Sequence |
>ligand-gated channel protein
MSRQPIKIPVSSPRLLASAIGVALTATSAAHMAQAAESTESKAQGNSISLGATTVTGEQTEQSYQTEKASSPKYTAPLIDTPRSITVVPQQLIKDTAATS LQDALRTVPGITFGAGEGGNPQGDRPFIRGFDAQGDTYLDGVRDTGAQSREIFAIETIEVSKGPNSAFGGRGAAGGTINMISKKAHLGNSFDAGYTWGSD QTQRYTLDGNYQFSDTVAGRLNLMSHESNVAGRDKVNYDRWGIAPSLAFGLGTDTRVNLDYYHMESNDLPDSGIPYGFSVGKTHTAASPDKPTNGGDSSN FYGLTNRDFRKTRADIATFAFEHDFNENLTIKNTLRHGNTMQDYILTQPDDSKANVNNGSVWRRANTRVGNTATTTNQTDLFGDFYVAGFKNSFSTGIEI SRETSEKSSYTVDTNTNGSSASACDPSMIGAPSGYNCTSLGNPNPDDPWSGSIARNYAGTDTSSTTRAIYAMDTLELSPEWLLNMGLRYDHFDTKYKSYT AAGATTYKGNDKSDFFTGQLGLVWKVAPNGSIYASYATSATPPGAMLGEGTDGNPLSGTPDRTGKLIDSDMEPEETTNYEIGTKWDVLNDRLSLTAAIFR TEKENTRVQVDADSYENAGKTRVDGIELSATGKITDQWQVFAGYSYMDGKQQDGGPLNKATNGNQLPNTPRNSASLWTTYAITPKLSIGGGAFYVDEVFG NVANTTYVPAYTRYDAMASYKLSKNVDLQLNVQNLTDKTYYDKAFSTHFANQAAGRTALLTTSFHF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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