Pseudomonas syringae pv. tomato NYS-T1, NB04_RS24770 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCACCTGGCGGCGGTCATGCCGCTGGAGTCGGCACTGGTGATGGTGATCCTGCGCTGGCCCGCCGATGTGCGTGAGCTCGACGCACTGGAGCTGAC CGAGGCCGTAACCGATGCCAGGTTGACCAAGAGCGAACGTGACATGGCCAAGCGTCTGGTCAAGGACATGAGCGCAGACTGGCAACCCGACCAGTATCAC GACACGTTTCAGGAAAAGATCATGCAACTGGTCCAAACCAAAGCCGGTGAAGGCAAGATCGAGGATGTCGAAACTGATCCGGGCGAGGAAGAGCGCAAGA GCGCCGATGTCATTGACCTTACCGATCTGCTGCGCCGCAGCCTGGCAGGCAAGAGCAGCGCCAGTAAAACACGCAAGTCTGCTGCGAAGGCCAAGGTCGC AGACAAGCAAAGCCCTAAGCCGAAACGACCTGCCGTGCGCAAGAAAACCGGCAAAGCTTCTTGAGCCATAAGCCTTTTGAGGCATACGGAGAAATCGTCC
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| DNA Sequence for Gene |
>NB04_RS24770
|ligD
ATGGTCAAGCCAGCCAGTGAATACACGCGCAAGCGCAACTTTGACGTCACCTCCGAGCCTGCAGAGAGCAAGCGTAAAGGCAAAGCGCGGTCCGGTGCAC TGAGTTTTGTGATTCAGAAGCACGATGCGCGCAACCTGCATTACGACTTTCGGCTGGAACTGGACGGTACGCTGAAGAGCTGGGCGGTGCCCAAAGGGCC CAGCCTGGACCCGAAACAGAAGCGTCTGGCCGTGCATGTCGAAGATCATCCGCTGGACTACGCCGCTTTTGAAGGCAGCATTCCGAAGGGCCAGTACGGC GGAGGCGATGTAATCGTCTGGGACAGGGGCATCTGGCAACCCCATGGTGATCCACGCAAGACCTATGAGGAGGGCAAACTCAAGTTCACCCTGATCGGCG AAAAACTCAGTGGCGAGTGGGCGCTGGTGCGCACTCGGCTCAAGGGCAGTGGCAGCAAGGAGCAGTGGCTGCTGATCAAGGAAAAGGACGACATCGCGCG ACCTGCCGCCGAATACGACATCACCGAGGCGCAACCGCAAAGCGTGATCAGCGGTGCGCACGTCGGGGCAGGGCGTTCAGCGCCAGCAGAGCCCAAAGCC AAGGCCGTTGAAGCGAAGCCTGCGCGCAAGCCCGCACCCAAAAAGGCGAAAGCCGTTTTCCCGGACACGTTTGCGCCGCAACTGGCGACACTGGTCGATG CGCCGCCTGCGGGCGACTGGCTGTACGAGATCAAGTTTGACGGCTATCGCATGCTGACGCGTATCCAGAATGACGAGGTGCGTCTGTTCACCCGTAACGG CAACGACTGGACTGACCAGTTGCCCGAGCTGACCAAGGCGCTCAAGGGCCTGAAGTTGCAAGACAGTTGGTTCGACGGCGAAGTGGTGGTGCTCGACGAG CAAGGGCTGCCGGATTTTCAGGGGTTGCAGAATGCCTTTGATGAGGGGCACAGCAAAAATATTTTCTATTACCTGTTCGACATGCCGTTTCTGAGTGGCG AAGACCTGCGCGAAGTGCCTCTTGAGCAGCGTCGCGACGCTTTGAAACAAGTGCTCGGCAGCCAGCGCAGCCGCTTGCTGCGCTATTCGGATGCGTTTCA GGCCGGGCATCAGGACATCGTGGCCAGTGCGGCGGCGATGGGCCTGGAGGGCGTAATCGGCAAGCGCGCTGGCAGCGCGTACGTTGGCAAGCGCAATGCC GACTGGATCAAGCTCAAATGCCGGTTGCGCCAGGAATTCGTGATCGTCGGTTATACCGCGCCGCAAGGCAGCCGCTCGGCCTTCGGCGCGCTGTTGTTGG CGGTCAATGACGATGCTCAGGGGCTGGTGTATGCCGGACGGGTCGGCACCGGGTTTACCGAGGCGACGCTCAAACACGTGCACAAGCAACTGAAACCGCT GCACCGCGAGGAATCGCCCTTGGCGAAAAAACTGACCTCGGCGCAGGCGCGCGGCGTGCAGTGGGTCGAGCCGACGCTGGTCTGCGAAGCTGAGTTTGCG CAGTGGACTCGCGAGGGCATCGTGCGTCAGGCAGCGTTTTTCGGCCTGCGCGGCGACAAGCCAGCTGGCGATGTGGTGCGTGAAGACGCTCAGCCAGCCG AGGCTGCGTCAGTCACTCCTGAGCCCTCCAGGCAGCCCGGCAAGAAAACTGCCCGAGGCAAGGTTGATGTGGCGGGCACTGGCATCAGTCATCCGCAGCG GGTGATCGACAGCACTACAGGCACGAAGAAAATCGAGCTTGCGCAGTTTTACGAGTCTATCGCCGACTGGATTCTGCCGTACCTGAACAAGCGGCCAGTG GCATTGCTGCGCTGCCCGGAAGGCATCGACGGCGAGCAGTTTTTTCAGAAACACGCCGAGCACCTTGCCATACCGCATATCAGGCAGCTGGATCGGGCGC TGGACCCCGGCCACGCCGCGCTGATGGAGATCGACTCTGTGCAGGCGCTGGTGGGCGCGGCGCAGATGGGCGCCATCGAGTTGCACACCTGGGGCGCGAC CCGCGACAGGATCGAAACACCGGATCATTTTGTGCTGGACCTTGACCCAGACCCGGCGCTGCCCTGGCGCAGCATGATCGAGGCCACGCAAATGGTTCTC GCCGTACTGGAGGAGCTGGGGCTTGAGGCTTTTCTCAAGACCAGTGGCGGCAAAGGCATGCACATTATTGTGCCGCTGGCGCGACAGGCCGAGTGGGACA CCGTGAAAGCCTTCGCCAAGGCCATCGCCGAGTTCATCAGCCGTCAGTTGCCGGAACGCTTCACAGCCACAATGGGGCCGAAAAACCGGGTCGGCAAGAT TTTCATCGATTACCTGCGCAACAGTCGTGGCGGCAGCACAGTGACCGCCTATTCGGTACGCGCCCGGCCGGGTTTGCCGGTCTCGGTGCCGATTGCGCTG CATGAGCTGACCGGTCTGACGTCGTCGGCGCAATGGGACATCACCAACCTTGAGCAACGCTTGAGCCAGCTCAAGAGTGACCCGTGGGCCGGTTACAGCA ACCGGCGCAAAATCACGCAAAAGATGTGGAAACAGCTGGGGGCTAAACAGCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGGCGGGTCTTCTATTTCACCGCCAATCGGCCAGGAAGGAAGCTGACGGGTTGGCGGTGAACGCACAGATCAGAGAATGCGGTAGAGCAAACGCTC GACCCTGACCCGGCTGACCCGCTTGAGGAACTTGCGCACTCCTTCAGGATAATTGGCCAGCGTGTCGAGCTCGTCGTACTGGTTGACGCGTTGTGTGTTG CGCATCAATTGGGCGATTTCCGCTTCACGCGGGTCGGTCCACTGGCCTTGCGGATCATCGATCAGCAAGCCGTTTTCCAGGTCGAGGTTGAACGCACGAG GGTTCAGGTTGTTGCCGGTCAGCAAGGTATAACGCTGATCGACCCAGATCCCCTTGAGGTGGAAGGTGTTGTCGCCGTGCTTCCACAAGTGCACGTTCAG ACGCTGCTGGGCGATGGCCTTCTGGTGCTTGTGGGCAAAGCGTCGCAGGCTGATTTCGTACAGATAGGGCAGGGCCGAAATCACTTTGAACGGCTCGTCC
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MVKPASEYTRKRNFDVTSEPAESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKSWAVPKGPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYG GGDVIVWDRGIWQPHGDPRKTYEEGKLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARPAAEYDITEAQPQSVISGAHVGAGRSAPAEPKA KAVEAKPARKPAPKKAKAVFPDTFAPQLATLVDAPPAGDWLYEIKFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDE QGLPDFQGLQNAFDEGHSKNIFYYLFDMPFLSGEDLREVPLEQRRDALKQVLGSQRSRLLRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNA DWIKLKCRLRQEFVIVGYTAPQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKHVHKQLKPLHREESPLAKKLTSAQARGVQWVEPTLVCEAEFA QWTREGIVRQAAFFGLRGDKPAGDVVREDAQPAEAASVTPEPSRQPGKKTARGKVDVAGTGISHPQRVIDSTTGTKKIELAQFYESIADWILPYLNKRPV ALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVL AVLEELGLEAFLKTSGGKGMHIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIAL HELTGLTSSAQWDITNLEQRLSQLKSDPWAGYSNRRKITQKMWKQLGAKQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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