Pseudomonas syringae pv. tomato NYS-T1, NB04_RS24770 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	6	163	8.5E-71
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	208	407	3.6E-46
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	425	520	6.9E-23
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	235	833	0.0
Gene3D	G3DSA:3.30.1490.70	-	-	-	237	404	2.1E-46
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	409	528	1.1E-36
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	39	143	1.5E-39
CDD	cd04862	PaeLigD_Pol_like	IPR033651	LigD polymerase domain, PaeLigD-type	577	803	0.0
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	410	525	2.56103E-51
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	188	214	-
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	31	-
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	224	408	7.99534E-82
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	229	406	4.7E-27
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	248	363	2.1E-46
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	226	845	1.0E-104
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	29	-
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	226	526	2.6E-110
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	410	529	3.43E-27
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	562	804	1.9E-86
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	528	555	-
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	567	849	3.4E-98

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.