Pseudomonas syringae pv. tomato NYS-T1, NB04_RS10770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGGCCGTCTGGGATGCGCGGGCCTCGTGGAAACTGGACGAAAACTGGAAAGTGTCGCTCAACGCCGAAAACCTCTTCGACCGCAAGTACTACAGCACC TCGATCGCCAACGACCGCTCCAACGTCTACGGCGAACCGCGCAGCTACGTCCTGACCTTGCGGGGGGATTTCTGATCTGAGTCTGGCTCCACAGATCGAG CCCATGCTTCGCGTGGGCATGCACTCCCGGCCGCTCCGCGTCCGACCTTGAGTGCTTGGCGCGGCGCAGATTTGTGGCGCGGAGCGTCACGCAAGGCATT CCCACTGGAGCGTTCGGAACGATAGGTGTCCATAAGAACACCTATCGTGCCAATGCTCCGCGTTGGCATGCCTTTCTGGACGCTCTGCGTCCGGTTTTGA TGTGCGGCCCGGTGTCGGCTTATGATGCAGACCTGTGTGCACGACCAAACTGCGCAAATACATTATCCTGCATCCTCGCTTTCAACGAGTCATCCCTCCC
|
|
| DNA Sequence for Gene |
>NB04_RS10770
ATGCCAACACCCTCCAACCGTCTGCGCACAGGACGCGTGAAAACGTGCGGCCTGCGTCTGGGCGGGATGGGGCTGGTGCTGGCATTGGCTTTTCAGGGCG AGGCACTGGCTGAAGAGTTCGAGTTCGATATCCCCGCACAGGCCCTGAACAGCGCCCTCAAGGAACTGGGGCGGCAAGGCGACCTGCAAATCCTCTACAA CCCCGACGATGTGAACGGCAAGCTCGGCAGCGCGGTGCACGGCAGGTTGACGCCTGAACAGGCAGTGGCGGACCTGCTGAAAAAAGCCGACGTGGCACAC AGCTTCGAGGCCAATACCCTGATCCTCGGCGTCGCCGCCTCCGCGCAGCCCATGAACCTGGGGCCGGTGGCGATCAAAGGCGACCATTTCGGCATCACCA CCGAAGGCAGCGGTTCGTATGCGGCCACCGGTATCAGCATCAACAAGACCGCACAATCATTGCGCGATACCCCGCAGTCAGTCACCGTCGTGACCCGTCA GTTGATGAACGACAAGAACCTCACCGGCCTGGACGAGGTGATGGCGCAAACGCCCGGCATCACTTTTTCGCAACGCAACTTTGGCTCTCATGTGTTCAGC TCACGCGGCTTTGCGCTGGAGGATGAGAGCTACACCATCGACGGCGTGGCCGGTCAGGGTTACAGCGTGACCGGCTGGATGACCCCGGACATGCAAATCT ACGACCGCGTCGAGGTGCTGCGCGGCGCAGCCGGGTTGCTGATCGGTGCGGGCAACCCCGGTGGCGCGGTCAATATGGTGCGCAAGCGGCCGACCGCCCT CCCGCAGTTCTCGATCACCACCCGCGCCGGCAGTTGGGACCAGTACCGCGTCGATCTGGACGGCAGCAGCAAGCTCAACGATTCGGGCAGCGTGCGCGGG CGCTTTGTAACCTCTTACGAAGACCGTGGCTCTTTCATCGACGGGCTGCAAAAAACCGCGCCGCTGCTGTACGGCATTCTGGAAACCGACCTGAGCGAAG ACACTACTCTGACCCTCGGTCTGCGCCATCAGAGCGCGGACATTCACGGCTTTTCGATTTTCGGCCTGCCCCGCTACAGCAACGGCAAGGCTATCGATCT GCCGCGCTCCACCTCGCTGGCCCAGAACTGGAACCGCCACCAGACGCGGACCGACGAAGTGTTCAGTGAGCTGGAGACACACTTTGACGAGAACTGGAGC GGCACGCTGTCAGCGACCCACTCCGAGGGCGCGTTCGAGCAGAAAGTCGCCTATGCACAAGGGGCCATAGACCCTGCGACGCAAAGCGGTTCGCGACTGG TCAAAACCCTGTTTCGCTCGGACGCGCTGCGAAGCGACGGTTTCGACAGCCATCTGGATGGTCGTTTCGACGCCTTTGGCCTGACCCATCAGGTGATGGT CGGTGGCAATTGGTCCGAGCAAAAACGTGATTCTCGCTACGCCACGGTCAACGCCAATCAACCGCTGGACATCTTCAATACCGATCACAACGCGATTACC GAACCTGCGCGCCCGGCCTGGCGCAGCACCGATTACAGCGACAAGCGTTATGGCGTTTACAGCAACCTGCGCCTGAGCCTGACGGAGTCGTTGAGCCTGG TCATGGGTGGGCGAGTCAGTTGGTATGACTATCAGAGCCAGTCCGCAGGCGTGACCACTCGCGCCCAGGAAAACAATCAGGTCACGCCGTTTCTGGGTGT GATCTACGACCTGAACCGCGACTGGTCGTGGTATGCCAGCTACACCGATATCTTTCTGCCGCAGAGCGGTTATCGCAGGGCATCCGGCGCATTCCTTGAC CCGGCGATCGGCGCCAGCCATGAAACCGGTATCAAGGGCGAGCTGTTCGACAAGCGCCTGAATGTGTCTTTTGCGCTGTTCTATGTGAAACAGAAAGACG TGGCGGTCGAGGACGATGCCCATGCAGGCCAGTGCCTGAGCAACGACGCTTACGGCACCTGCTATGTGAATGGCGACATCCGGCGCAGCAAGGGTATCGA CATGGAAGTCAGTGGCGAACCGCTGCCTGGGTTGCAGACCCTGGCCGGTTACACCTTCAACCTTACACGCGGCAGCGATGGGCAATCTATTTCAGCAGAA ACACCCCGGCATATTGTGCGCCTGTCCAGCAGCTACACCCTGCCCGGCACCTGGCGTCGCCTGACTGTCGGTAGCGGTGTGTCGGCGCAGAGCGGCTACT CGGAACACGAGACGACCCAGCCCATCGACAACCCTGGCCGCGCCATCTGGGACGCGCGGGCCTCGTGGAAGATCGACGAACACTGGTCAGTGGCCCTCAA CGGCAACAACCTGCTGGATCATAAATACTACAAGGCCACCGGCGACATCGACCGCGGCAACTACTACGGCGACCCACGCAACTACGTCCTGACGTTGCGC GGGGATTTTTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAGACTGGCGATCAAGACCGAACGCGGAGCGTCCAGAACGGCATGCCGACGCGGAGCGTCGCACGATAGTCGAGCTTATCGTTCCGCACGCTCCAGCGTG GGACTGCCGTTCGTGACGCTCTGCGTCACGCAAGCCGTTCGGCAAGCCCCTGCAGAAAAGCCTCCGCGAGGACCACGTTGTCATGCCGCTGATCAACCGT TGTCGAGCTGCGCAGCCCGTTCACTGAGCACTGTTCAAGCAGCACCGTTTCAGCTTTGGCAATCTGCCCGGGCGCGCGGCTCTGCCCGGCCCACCAGCAA TCGGCCTGTACGTTGAGCTTTTTCAGGGTAAACGCCTGGCTCAGTTGCGCGTTGGCTTCCAGTAATTTGTAACCGGTTTCGATCTCGTCCTGTACGGCGA TGTCCTGGAAGATGCTGCGCAGGTTGTCGGCGTTCATTCCGGCTTGCTGTGCAACTTCGTCCACCACCCAGTCAATCACCTCGCCCTCGCTGGCAACCGA
|
|
| Amino Acid Sequence |
>ligand-gated channel
MPTPSNRLRTGRVKTCGLRLGGMGLVLALAFQGEALAEEFEFDIPAQALNSALKELGRQGDLQILYNPDDVNGKLGSAVHGRLTPEQAVADLLKKADVAH SFEANTLILGVAASAQPMNLGPVAIKGDHFGITTEGSGSYAATGISINKTAQSLRDTPQSVTVVTRQLMNDKNLTGLDEVMAQTPGITFSQRNFGSHVFS SRGFALEDESYTIDGVAGQGYSVTGWMTPDMQIYDRVEVLRGAAGLLIGAGNPGGAVNMVRKRPTALPQFSITTRAGSWDQYRVDLDGSSKLNDSGSVRG RFVTSYEDRGSFIDGLQKTAPLLYGILETDLSEDTTLTLGLRHQSADIHGFSIFGLPRYSNGKAIDLPRSTSLAQNWNRHQTRTDEVFSELETHFDENWS GTLSATHSEGAFEQKVAYAQGAIDPATQSGSRLVKTLFRSDALRSDGFDSHLDGRFDAFGLTHQVMVGGNWSEQKRDSRYATVNANQPLDIFNTDHNAIT EPARPAWRSTDYSDKRYGVYSNLRLSLTESLSLVMGGRVSWYDYQSQSAGVTTRAQENNQVTPFLGVIYDLNRDWSWYASYTDIFLPQSGYRRASGAFLD PAIGASHETGIKGELFDKRLNVSFALFYVKQKDVAVEDDAHAGQCLSNDAYGTCYVNGDIRRSKGIDMEVSGEPLPGLQTLAGYTFNLTRGSDGQSISAE TPRHIVRLSSSYTLPGTWRRLTVGSGVSAQSGYSEHETTQPIDNPGRAIWDARASWKIDEHWSVALNGNNLLDHKYYKATGDIDRGNYYGDPRNYVLTLR GDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|