Pseudomonas syringae pv. tomato NYS-T1, NB04_RS10770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0009279 | cell outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Molecular Function | GO:0038023 | signaling receptor activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0015891 | siderophore transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0015343 | siderophore transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0019867 | outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 374 | 800 | 3.4E-46 |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 154 | 256 | 1.6E-17 |
| SUPERFAMILY | SSF56935 | Porins | - | - | 149 | 803 | 2.07E-114 |
| NCBIfam | TIGR01783 | JCVI: TonB-dependent siderophore receptor | IPR010105 | TonB-dependent siderophore receptor | 156 | 803 | 8.3E-101 |
| CDD | cd01347 | ligand_gated_channel | - | - | 160 | 803 | 2.90018E-96 |
| PANTHER | PTHR32552 | FERRICHROME IRON RECEPTOR-RELATED | IPR039426 | TonB-dependent receptor-like | 134 | 803 | 0.0 |
| Gene3D | G3DSA:3.55.50.30 | - | - | - | 38 | 128 | 1.4E-19 |
| FunFam | G3DSA:2.170.130.10:FF:000010 | Ferripyoverdine receptor | - | - | 133 | 263 | 3.2E-37 |
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 137 | 265 | 3.0E-26 |
| SMART | SM00965 | STN_2 | IPR011662 | Secretin/TonB, short N-terminal domain | 62 | 112 | 1.1E-5 |
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 266 | 803 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.