Pseudomonas syringae pv. syringae 41a, PSS41A_RS14110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae strain 41a 41A04, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGGCGATGCCGGACGGGGGTTTGCCGTGGTAGCCGACGAAGTGCAGCGGCTGGCCGAGCGTTCGTCGTCTGCGACCAAGCAGATCGAAACGCTGGTCC GGGCCATCCAGAACGACACCAACGAGGCGGTTATCTCCATGGAGCAGACCACCAGCGAAGTGGTGCGTGGCGCACGCCTGGCGCAGGACGCCGGGGTGGC GCTGGGGGAAATCGAAGGGGTGTCCAGGGTGCTGGCCGAGCTGATCGAAAGTATCACCGACGCCGCCCACCAACAGGCCGAGTCTGCCGGGCAGATTTCG CAGATCATGACCGTCATTCAGCAGACCACTTCGCAGACCACCTCGGGCACATCGGCCACCGCTGAAAGCATCGGCAACCTGGCGAAAATGGCCAGCGAAA TGCGGCGCTCGGTATCGGGCTTTGCCCTGCCGTCATCGAAGAAAGCCGGATGATGTGCCGCTCATGAACAACCTTGATTGGGTAACGGACGGTACTCGTC
|
|
| DNA Sequence for Gene |
>PSS41A_RS14110
ATGGCTGATCGTCACGATTACGTTGCTCTTGAGTGGCTGAAGGGCGAGATCGCCGAAACGCTGCGCCAGGCCCGTCAGGCGCTGGACCTGTTCATCGAAG ACCCGGCCAATGCTGCGGCGATGGCCGAGTGCCTGAACCTGGTGCATCAGGTTCACGGCAGTCTGCAGATGATCGAGTTCTATGGCGCCGCGTTGCTGGC CGAGGAAATCGAGCAACTGGCGCTGGCGGTCCAGCAGAACCGTGTCAGCCATCCGATCGAGTCCGAGCAACTGCTGATCCAGGCCATGAGTCAGTTGCCG GTTTACCTGGAGCGCATTCATTCCGCGCGCCGCGACCTGCCGCTGGTGGTCTTGCCACTGCTCAATGACCTGCGCAGCGCGCGGGGCGAAAGTCTGCTCT CGGAAACCAGCCTGTTCGCCCCGCAGCTGGTCGTCGTGCCGGCGCTTGATGAGCAGGAGCTGGCGCGGCGCAATACCCCGGAATTGCCCAACCTGCTGCG CAAGCTGCGCCAGACGCTGCAGGCGGCGCTGGCCGGCCTGATGCGCGAGCAGGGCGTGCAGACCCAGCTCGGTTACATGGCCAAGGTGTTTGCCCGGCTT GAGCAGTTGTGCGAAGACGCGCCGCTCGGTGCGCTCTGGCGGATCGCCTCGGCACTGGTCGAAACCATGCTCAACGGCAACTTCACCAACAGTCCGGCGC TGCGCAGTCTGTTGAAGGACGCCGACAAGGAACTCAAGCGTCTGGCCGAGCAGGGCGTCATCGGCATCAATCAGCCCGCCCCCGAAGAGCTGTTGAAAAG CCTGCTGTTCTACATCGCCAAGTCCGACAGCCTGGCGCCGAAGATGCTCGACCTAAAGGACCAGTACGCGCTGGCCGATGCCTTGCCCGGCAACGACGTG GTCAACGAGGAGCGCGCCCGCATGGCCGGTCCGGACCGTGACGCCATGCGTTCGGTGATCGTGGCCTTGTGCGAAGGGCTGGTCAGGGTCAAGGAACGGC TCGACGTGTTCGTGCGCGGCGACCGTCAGCATGTCAGCGAGCTGAACGCGTTGCTGCCGCCGTTGCGGCAGATTGCCGATACCCTGGCGGTGCTGGGTTT CGGCCAGCCGCGCAAGGTGATCATCGATCAGTTGTCTGTGGTCCTCGGTCTGGCCCAGGGGCAGCGCGAGCCCAGCGACGCTGCGCTGATGGATGTGGCG GGTGCCTTGCTCTACGTCGAATCGACCCTTGCCGGCATGGCCGGGAGCCACGAGCAGGTCAGCCGCGAAGAAAGCCGCCTGCCGACCACCGACCTGACGC AGATTCATCAACTGGTGATTCGCGAAGCCCGCACCGTGTTGCAGCTGGCCAAGGATGTGATCCTCGATTACATCGACGGCGAGTGGGACCGGCAGCGGCT CGATCCGCTGTGCGCGCTGATCGTGCAGGTTCGTGGTGCGCTGGCCATGATCCCGCTGGCACGTGCGGCCAGCCTGCTGGCCGCCTGCAACGAATACATT CAGGAACACCTGCTGGTGGACGAAACCCGTCCCACCTGGGTTCAGCTCGATTGCCTGGCCGACACCATCACTGGCATCGAGTATTACCTGGAGCGCATGC TCGAAGATCATCAGGCGCCGGGCGACCAGGTGCTCGACATGGCCCAGCAAAGCCTGGCACGGCTGGGCTATACGCCTGCTGCGGACACCCTCGAAGTGCC GTTGCTCGAAGAAATCATCACTCAGGACGAGTTGCTGGAACTGGATGACCGCAAGGCGCTGGTCAGCCCCACGCAAACCATTGCCCAGGTCCTCGCCAGC CCGGTCTCGGCCGTTAACCCGCCCGCCCGTAACGTCCCCACCAGCCTGTTGCCGCCCTCGGCCGGGGAAGAGGCGGTGGACGACGAGTTGCGCGATGTGT TTCTCGAAGAGGCCGACGAGGTGCTCGACGCGCTGCGTGAGTACCTGCCGCGCTGGTTCGCCTCGCTCGGCCGCGACGGCCACTGGGACAGCACGGCGCT GACCGAAGTGCGTCGTGCGTTTCATACCCTCAAGGGCAGCGGCCGGATGGTGCGTGCGCTGATCCTCAGCGAACTGGCCTGGTCGGTGGAAAACCTGCTC AACCGGGTGCTGGAAGGCGATGTGCTGCCGGGCCTGGAAGTGCAGCAACTGATGAGTGAAGTGCAGGCGCTGCTGCCGTCGGTCATCCGCGATTTTGCCG AAGATGCGCAGTGCCAGCGCGACGATGTCGACCTGTTGGCGGCTCGCGCCCATGCGTTGGCCAATGGGCTGGAGCCACCGACGCTGCCGGCCGTGGATGA TCCTGCGCCAGGCAAACCTGTTGCCGACGAACCGCTCGATCCACAGTTGCTGGAGATTTTCCGTCAGGAAGCGCTCGGCCATCTGAATACCCTCGGCCGC TTCCTCGACAATGCCGAACAATCAGCGTCGCCGGCGATCAGCGACGCGGTGCTGCGTGCGTTGCATACGCTCAAGGGCAGCGCGCACATGGCCGGGGTGC TGCCGATTGCCGAACTGGCCAGCCCGCTCGACCAGTTAGTGCGTGAATACAAGGCCAACCTGATCGATATCGGTTCACCGGAGCTCGTCCTGCTGCGCAG CGCCGAACCGTTGCTGCACAAGGGCCTCGAACAACTGGACAGCACGCCGCTGGCCGATATTCCGGGCGCCGCGCCGCTGATCGAGGCTGCCCTGGCGATG CTCAACGACCGCCTCACCGTGGTGCTGCGCGAGTCGGACAGCGGCCTGCGTATCAAGCGCAACCCCACGCTGCTCGCCGGTTTTCTGGCCGAAGGCATGG ACATCGTGCTGGATGCGGAAAACCTGCTGCGGGGCTGGCGGCAGCACCCCGGCGAACGCCAGGAACTGAGCGCGCTGCTCGACGAGCTGACCACCCTCGG TCATGGCGCGCATCTGGCCGACCTGCCGCAGGTCGATGAGCTGTGCGAAGCCTTGCTCGACCTCTACGGCGCGGTCGAGGAAAGCAGTCTGGCAGTCAGC GAGCGCTTTTTCGATGTGGCAGAAAATGCTCACGAAGCGCTGATCAACATGCTTGATCAGGTGGCCGCTGGTCAGGATGTCGAGCCACGTCCCGAATGCG TGCGTGCCTTGAACCAGTTGCTGGATCAGGCGCTTGACCCTTCGGCGACCGGGCTGGTCAAGAGCGACGGCCACCGCACCTTGAGCGTTACCGAGCTCAA CGCCGCCACCGCGCAGCTGGCCAGCGAGGCCGGGCACACTGAGACTGAAGTTGCCGGGCCGGACGACGAAATCGTCGAGATATTTCTGGAAGAGGCCGTC GATATCCTCGACAGCGCCGGTCAAGCCTTGCAGCGTTGGCTGGCCGATCCGGAAAACCCTGCGCCGCTGGCCTCCTTGCAGCGCGACCTGCACACCCTCA AGGGCGGTGCGCGGATGGCTGAGGTGGCCGAGGTGGGCGACCTGGCCCACGAACTGGAAAACCTCTACGAGGGATTGATCGACCGGCGCTTCAACCATTC GCCGACGCTGGCCGAGCTGCTGCACGAGAGCCACGACCATCTGGCCATTCTGCTTGAGCAGCTGTATCGGCAGGAAGCGCTCAGCGACCCTTCGGCCTTG ATCGAGGCGCTGCGCAGCTGCCGCACGCTCGAGAACGCCGGGCCTGAGGCGCAGGACTCGCCTGCCGCCAGTGAAGATCCTCCAGAGCATGACACCGAGC TGCGTGAAGTCTTCCTCGAGGAAGGTTTCGACATCATGGAAAGCTCGGGCGCGGCATTGGCGCGCTGGCAGGCCGATCCGCACAACATGCTGGAAGTTGA AAACCTGCTGCGCGACCTGCACACCCTCAAGGGCGGCGCGCGGATGGTGGAAATTGCTCCGATAGGCGACCTCGCCCACGAGCTGGAGACGCTTTACGAG GGGCTTTCCGCCGGCAGCCTGCAGCCTGCGCCGTTGATGATGGGGCTGTTGCAGAGCGGCCAGGATGTGCTGGCCGACATGCTCGATGCCGTGCGCAGTG ACAAGCCGCTGCCTGACGCGACCTTGCTGATTGAGAGCATTCGCAGACTGGCCACCGACGAGCCGTCGGGCGCAGTGCTGGCTGCGCAGGGCCTGGAGGT CCATCCGGAGTCGGTGGTCGCCGTGGCCCCGGTCGCCGAGGGCGAGGTCGAGCGCAGTGGTCCGGAAATGGTCAAGGTGCCTGCCGAGCAACTGGAAGAC CTGGTCAACCTGGCCGGCGAAACCTCCATCTTCCGTGGACGTATTGAACAGCAGATTATTGATTCACAGATCGCCCTGGTAGAGATGGAAACCACCATCG AGCGGATGCGCGATCAGTTGCGTCGTCTTGATATGGAAACCCAGGGGCGCATTCTCAGCCGTGAGCAGGTTCAGGCCGAGCGGCTGGGCTATGAAGAGTT CGACCCGCTGGAAATGGACCGCCATTCCCAGTTGCAGCAGTTGTCGCGCGCTTTGTTCGAATCGGCGTCCGACCTGATGGACCTCAAGGAAACCCTCGGC GCGCGTGCACGCGACGCGGAAACGCTGCTGTCGCAACAGGCCAGGGTCAACACCCAGCTTCAGGAAGGCCTGATGCGTACACGCATGGTGCCGTTCGAAC GATTGGTGCCGCGCCTGCGTCGCGTGGTGCGCCAGGTGGCCTCGGAACTGCACAAGAAAGTCCATTTCGAAGTGGGCAACGCCGACGGTGAAATGGACCG CAACGTGCTGGAACGAATGGTCGCGCCACTGGAGCACATGCTGCGCAATGCCGTCGATCACGGGCTTGAAAGCACCGAAAAACGCATCGCTGCCGGCAAG CCGGAACAGGGCCATATCAGTCTTGAGCTGATGTACGAAGGCGGCGATATGGTCATCGAACTGAGCGATGACGGCTCGGGCGTTGACCTCGCAGCGGTAC GCCGCAAAGCCATCAAGCGCGGCATGATCCATCCGGATGCCGATCTGTCCGACCATGAAGTGCTGCCGTTCATCCTGCAGGCGGGGTTTTCCACCAGCGA GATCATCACCCAGATTTCCGGCCGTGGCGTGGGCATGGATGTGGTGCACGCCGAGGTCAAGCAACTGGGCGGTTCGATGGTCATCGACTCGGTACCGGGC CAGGGCACGCGCTTCCGTATTCGACTGCCGATTTCGGTATCGGTCAATCGGGCGTTGATGGTGACGTGCGGCGAAGAACAGTATGCGGTGCCGCTCAATA CCGTCGATGGCATCGTGCGCGTCATGGCCAATGAACTGGACGGCTATTACCAGACCACCCCGCCGCGCTATCAATATGGTGGGCGCAGTTACGAGTTGCG CTATCTGGGCGAGTTGCTGGGCAGCAGTCCGCCCCGGCTGGCCGGGCAATTGCAGCCGCTGCCGGTGCTGCTGGTGCATCTGCAGGATCAGTGGGTGGCG GTGCAGGTCGATGCGCTGGCAGGCTCGCGCGAGATCGTGGTCAAGAGCCTCGGCCCGCAGTTCTCCAGGGTGCAGGGCATTTCCGGTGCGACCATCCTGG GTGACGGGCAAGTGGTGCTGATTCTTGATCTGATGGCGAAGATTCGTACCTTGCAGGGCTTGCCTTTCAGAGGAGGCATGGCGCCTGCCTACCACGAAGC CGAGCACGCCAGACCGCTGTTGGTGATGGTAGTGGACGATTCGGTGACGGTGCGCAAAGTTACCAGCCGCTTGCTGGAACGCCACGGCATGCACGTGCTG ACCGCCAAGGACGGTGTCGATGCCATGACCCTGTTGCAGGAGCACACGCCTGACATCATGCTGCTCGATATCGAAATGCCGCGCATGGACGGCTTTGAAG TCGCCAGCCAGATCCGCCAGGACGAACAGCTCAAGGAATTGCCTATCATCATGATCACCTCCCGCTCGGGCCAGAAGCATCGCGATCGGGCGATGGCGGT GGGCGTCAACGAGTACCTGAGCAAGCCGTATCAGGAAACCGTATTGCTGGAGAGCATCGCTTACTGGAGCCAGGCACATGTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGGCACGTTTCAGACAAGCCGTCTGACCAGCCTGACCGGCTTGCTGGTGCCGTTGAGTGACCGGCATCTGCTGCTGCCCAATGTCGCGGTCGCCGAGTTG ATCGATTATCAGGATTGCAGCGCAGAGCCGGATGCCCCTGAGTGGTACCTCGGGCCGATCAGCTGGCGCGAACTGACCTTGCCACTGCTCAGCTTCGAAG CTGCCTGCGGAGGCCGCACCCGCGTTGGCGGTCGAGCCCGGATCGTGGTGCTCAACGCGCTGGGCGGACGCAACGATGTCAGATTCATCGCCCTGCTGAC TCAGGGCATCCCGCGCTCGTGCAAGGTCGACAGCCAGTTGAGCTACGTCGACGTCCCGCTGGCCGAACTGGAACTGGCCGCCGTACAGATCGGCGAAACC GTAGCCCGCATTCCCGACCTCGAAGGGCTGGAACAATGGTTGGTGGATGCAGGGCTGTCATAGTTAAAGAGGACGCGGAGCGTCCAGAACGGCATGCGAC
|
|
| Amino Acid Sequence |
>histidine kinase
MADRHDYVALEWLKGEIAETLRQARQALDLFIEDPANAAAMAECLNLVHQVHGSLQMIEFYGAALLAEEIEQLALAVQQNRVSHPIESEQLLIQAMSQLP VYLERIHSARRDLPLVVLPLLNDLRSARGESLLSETSLFAPQLVVVPALDEQELARRNTPELPNLLRKLRQTLQAALAGLMREQGVQTQLGYMAKVFARL EQLCEDAPLGALWRIASALVETMLNGNFTNSPALRSLLKDADKELKRLAEQGVIGINQPAPEELLKSLLFYIAKSDSLAPKMLDLKDQYALADALPGNDV VNEERARMAGPDRDAMRSVIVALCEGLVRVKERLDVFVRGDRQHVSELNALLPPLRQIADTLAVLGFGQPRKVIIDQLSVVLGLAQGQREPSDAALMDVA GALLYVESTLAGMAGSHEQVSREESRLPTTDLTQIHQLVIREARTVLQLAKDVILDYIDGEWDRQRLDPLCALIVQVRGALAMIPLARAASLLAACNEYI QEHLLVDETRPTWVQLDCLADTITGIEYYLERMLEDHQAPGDQVLDMAQQSLARLGYTPAADTLEVPLLEEIITQDELLELDDRKALVSPTQTIAQVLAS PVSAVNPPARNVPTSLLPPSAGEEAVDDELRDVFLEEADEVLDALREYLPRWFASLGRDGHWDSTALTEVRRAFHTLKGSGRMVRALILSELAWSVENLL NRVLEGDVLPGLEVQQLMSEVQALLPSVIRDFAEDAQCQRDDVDLLAARAHALANGLEPPTLPAVDDPAPGKPVADEPLDPQLLEIFRQEALGHLNTLGR FLDNAEQSASPAISDAVLRALHTLKGSAHMAGVLPIAELASPLDQLVREYKANLIDIGSPELVLLRSAEPLLHKGLEQLDSTPLADIPGAAPLIEAALAM LNDRLTVVLRESDSGLRIKRNPTLLAGFLAEGMDIVLDAENLLRGWRQHPGERQELSALLDELTTLGHGAHLADLPQVDELCEALLDLYGAVEESSLAVS ERFFDVAENAHEALINMLDQVAAGQDVEPRPECVRALNQLLDQALDPSATGLVKSDGHRTLSVTELNAATAQLASEAGHTETEVAGPDDEIVEIFLEEAV DILDSAGQALQRWLADPENPAPLASLQRDLHTLKGGARMAEVAEVGDLAHELENLYEGLIDRRFNHSPTLAELLHESHDHLAILLEQLYRQEALSDPSAL IEALRSCRTLENAGPEAQDSPAASEDPPEHDTELREVFLEEGFDIMESSGAALARWQADPHNMLEVENLLRDLHTLKGGARMVEIAPIGDLAHELETLYE GLSAGSLQPAPLMMGLLQSGQDVLADMLDAVRSDKPLPDATLLIESIRRLATDEPSGAVLAAQGLEVHPESVVAVAPVAEGEVERSGPEMVKVPAEQLED LVNLAGETSIFRGRIEQQIIDSQIALVEMETTIERMRDQLRRLDMETQGRILSREQVQAERLGYEEFDPLEMDRHSQLQQLSRALFESASDLMDLKETLG ARARDAETLLSQQARVNTQLQEGLMRTRMVPFERLVPRLRRVVRQVASELHKKVHFEVGNADGEMDRNVLERMVAPLEHMLRNAVDHGLESTEKRIAAGK PEQGHISLELMYEGGDMVIELSDDGSGVDLAAVRRKAIKRGMIHPDADLSDHEVLPFILQAGFSTSEIITQISGRGVGMDVVHAEVKQLGGSMVIDSVPG QGTRFRIRLPISVSVNRALMVTCGEEQYAVPLNTVDGIVRVMANELDGYYQTTPPRYQYGGRSYELRYLGELLGSSPPRLAGQLQPLPVLLVHLQDQWVA VQVDALAGSREIVVKSLGPQFSRVQGISGATILGDGQVVLILDLMAKIRTLQGLPFRGGMAPAYHEAEHARPLLVMVVDDSVTVRKVTSRLLERHGMHVL TAKDGVDAMTLLQEHTPDIMLLDIEMPRMDGFEVASQIRQDEQLKELPIIMITSRSGQKHRDRAMAVGVNEYLSKPYQETVLLESIAYWSQAHV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|