Pseudomonas stutzeri NT0128, UF78_RS11345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 11 | 82 | 2.5E-5 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 20 | 134 | 2.44265E-5 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 144 | 317 | 7.6E-63 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 151 | 315 | 6.4E-57 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 135 | 315 | 8.1E-75 |
| Pfam | PF08448 | PAS fold | IPR013656 | PAS fold-4 | 18 | 137 | 7.2E-9 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 6 | 141 | 7.2E-36 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 12 | 98 | 8.55E-13 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 157 | 313 | 1.73184E-70 |
| Coils | Coil | Coil | - | - | 137 | 157 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 160 | 316 | 2.9E-52 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 156 | 312 | 1.0E-48 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 11 | 77 | 8.0E-7 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 150 | 316 | 8.5E-56 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 144 | 316 | 1.7E-70 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.