Pseudomonas stutzeri 19SMN4, UIB01_RS07920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 420 | 591 | 1.1E-65 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 602 | 853 | 1.6E-88 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 436 | 592 | 1.88E-49 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 304 | 418 | 1.06E-17 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 426 | 591 | 7.7E-41 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 612 | 843 | 8.93518E-108 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 428 | 588 | 3.5E-41 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 299 | 425 | 2.5E-18 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 321 | 417 | 2.97627E-7 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 607 | 838 | 5.5E-75 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 426 | 604 | 3.4E-59 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 313 | 416 | 9.1E-8 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 601 | 843 | 1.1E-113 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 606 | 850 | 1.44E-88 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 312 | 378 | 4.8E-8 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 299 | 850 | 0.0 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 432 | 586 | 6.6E-47 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 605 | 853 | 8.4E-97 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 308 | 426 | 2.9E-15 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 64 | 225 | 1.3E-19 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 432 | 589 | 5.44133E-64 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.